C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Sec61 alpha 2 subunit (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000379033 SEC61A2-201 ENSG00000065665 9606 + 10:12129641-12165404 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartMuscleENST00000379033
Transcript ID Brain Heart Muscle
ENST00000379033 4.335±0.00 0.843±0.00 2.807±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002474 TAS antigen processing and presentation of peptide antigen via MHC class I
GO:0002479 TAS antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent
GO:0003674 ND molecular_function
GO:0005783 IEA endoplasmic reticulum
GO:0008150 ND biological_process
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0042590 TAS antigen processing and presentation of exogenous peptide antigen via MHC class I

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000102981 Sec61a2-001 protein_coding Mus_musculus 0 2039
ENSMUST00000032168 Sec61a1-001 protein_coding Mus_musculus 0 909
ENSMUST00000124985 Sec61a2-003 processed_transcript Mus_musculus 0 628
ENSMUST00000145421 Sec61a1-002 retained_intron Mus_musculus 0 564
ENSMUST00000148745 Sec61a2-004 processed_transcript Mus_musculus 0 531
ENSMUST00000132908 Sec61a2-002 processed_transcript Mus_musculus 0 508
ENSMUST00000026926 Sec61a2-005 protein_coding Mus_musculus 0 455
ENSMUST00000026927 Nudt5-001 protein_coding Mus_musculus 0 446
ENSMUST00000124859 Sec61a2-007 processed_transcript Mus_musculus 0 359
ENSMUST00000132469 Sec61a2-008 processed_transcript Mus_musculus 0 254

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