C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cyclin-dependent kinase 13
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000065883 CDK13 9606 + 7:39950037-40097134 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000181839 CDK13-001 39950037-40097134 protein_coding
  ENST00000340829 CDK13-002 39950510-40095555 protein_coding
  ENST00000465643 CDK13-007 40092247-40095532 retained_intron
  ENST00000478563 CDK13-003 40078414-40093020 retained_intron
  ENST00000484589 CDK13-004 39987836-40070088 processed_transcript
  ENST00000611390 CDK13-201 39951713-40093023 protein_coding
  ENST00000613626 CDK13-202 39950360-40069346 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000181839ENST00000340829ENST00000465643ENST00000611390ENST00000613626
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000181839 2.106±0.00 2.985±0.00 0.476±0.00 1.945±0.00 2.355±0.00 0.823±0.32 0.879±0.43 1.073±0.00 0.576±0.00 1.948±0.33 1.731±0.00 2.658±0.95 1.386±0.14 2.981±1.08
ENST00000340829 2.917±0.00 2.807±0.00 1.978±0.00 1.636±0.50 2.390±0.17 2.811±0.32 3.187±0.00 3.782±1.52 1.765±0.40 1.901±0.27 2.540±1.67 3.836±0.87 3.054±0.26 8.677±1.00
ENST00000465643 N/A N/A N/A N/A N/A N/A 1.707±0.00 N/A 4.620±0.00 3.113±0.00 N/A 3.634±0.00 N/A 5.322±0.00
ENST00000611390 N/A N/A 2.424±0.00 6.972±0.00 4.057±0.00 3.578±0.00 2.736±0.00 5.618±0.00 7.379±0.00 6.601±0.00 N/A 7.287±0.00 3.039±0.00 4.808±0.00
ENST00000613626 N/A N/A N/A N/A 2.469±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000380 ISS alternative mRNA splicing, via spliceosome
GO:0002945 IPI cyclin K-CDK13 complex
GO:0004672 TAS:IEA protein kinase activity
GO:0004693 IEA cyclin-dependent protein serine/threonine kinase activity
GO:0004713 IEA protein tyrosine kinase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005615 IDA extracellular space
GO:0006468 IEA protein phosphorylation
GO:0007088 TAS regulation of mitosis
GO:0007275 TAS multicellular organismal development
GO:0008284 TAS positive regulation of cell proliferation
GO:0008353 IDA RNA polymerase II carboxy-terminal domain kinase activity
GO:0016032 IEA viral process
GO:0016607 IDA nuclear speck
GO:0016772 IEA transferase activity, transferring phosphorus-containing groups
GO:0019908 ISS nuclear cyclin-dependent protein kinase holoenzyme complex
GO:0030097 IMP hemopoiesis
GO:0030332 IPI cyclin binding
GO:0044822 IDA poly(A) RNA binding
GO:0070816 IDA phosphorylation of RNA polymerase II C-terminal domain

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000063726 cdk12 cyclin-dependent kinase 12 protein_coding Danio_rerio
ENSDARG00000076791 cdk13 cyclin-dependent kinase 13 protein_coding Danio_rerio
ENSMUSG00000041297 Cdk13 cyclin-dependent kinase 13 protein_coding Mus_musculus

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