C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ELAV like RNA binding protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000066044 ELAVL1 9606 - 19:7958579-8445041 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000351593 ELAVL1-201 7962275-8445041 protein_coding
  ENST00000407627 ELAVL1-001 7958579-8005608 protein_coding
  ENST00000593807 ELAVL1-005 7963630-8005659 protein_coding
  ENST00000595499 ELAVL1-006 7972888-7973785 retained_intron
  ENST00000596154 ELAVL1-004 7960917-7981112 protein_coding
  ENST00000596459 ELAVL1-002 7963159-8002203 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000351593ENST00000407627ENST00000596459
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000351593 26.929±0.00 24.575±0.00 2.822±0.00 N/A 13.298±7.47 14.335±10.27 18.980±0.00 18.497±11.31 14.417±0.00 21.367±13.98 22.305±0.00 32.796±18.30 36.326±7.79 54.309±16.84
ENST00000407627 N/A N/A N/A 6.060±0.00 N/A N/A N/A N/A N/A N/A 0.550±0.00 N/A N/A N/A
ENST00000596459 N/A N/A 4.242±0.00 N/A N/A 5.286±0.00 2.038±0.00 N/A N/A N/A 3.295±0.00 7.004±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002NQ CIL_0002NQ_0001 CGP 19:7926718-8445041
CIL_0000UT CIL_0000UT_0001 CGP 19:7958579-8445041

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 IDA:IEA RNA binding
GO:0003725 IDA double-stranded RNA binding
GO:0003729 TAS mRNA binding
GO:0003730 ISS mRNA 3'-UTR binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0007275 TAS multicellular organismal development
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0017091 IDA AU-rich element binding
GO:0019901 IPI protein kinase binding
GO:0035925 IDA mRNA 3'-UTR AU-rich region binding
GO:0044822 IDA poly(A) RNA binding
GO:0045727 IDA positive regulation of translation
GO:0048255 IMP mRNA stabilization
GO:0070935 IDA 3'-UTR-mediated mRNA stabilization
GO:2000036 ISS regulation of stem cell maintenance

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000016405 hug HuG protein_coding Danio_rerio
ENSDARG00000038695 elavl1 ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R) protein_coding Danio_rerio
ENSMUSG00000040028 Elavl1 ELAV (embryonic lethal, abnormal vision)-like 1 (Hu antigen R) protein_coding Mus_musculus

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