C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ELAV like RNA binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000596459 ELAVL1-002 ENSG00000066044 9606 - 19:7963159-8002203 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderColonHeartMuscleOvaryENST00000596459
Transcript ID Bladder Colon Heart Muscle Ovary
ENST00000596459 4.242±0.00 5.286±0.00 2.038±0.00 3.295±0.00 7.004±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002NQ CIL_0002NQ_0001 CGP 19:7926718-8445041
CIL_0000UT CIL_0000UT_0001 CGP 19:7958579-8445041

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 IDA:IEA RNA binding
GO:0003725 IDA double-stranded RNA binding
GO:0003729 TAS mRNA binding
GO:0003730 ISS mRNA 3'-UTR binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0007275 TAS multicellular organismal development
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0017091 IDA AU-rich element binding
GO:0019901 IPI protein kinase binding
GO:0035925 IDA mRNA 3'-UTR AU-rich region binding
GO:0044822 IDA poly(A) RNA binding
GO:0045727 IDA positive regulation of translation
GO:0048255 IMP mRNA stabilization
GO:0070935 IDA 3'-UTR-mediated mRNA stabilization
GO:2000036 ISS regulation of stem cell maintenance

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000098950 Elavl1-201 protein_coding Mus_musculus 0 1384
ENSDART00000110171 elavl4-001 protein_coding Danio_rerio 0 198
ENSDART00000134787 elavl4-002 protein_coding Danio_rerio 0 198

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