C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: polymerase (RNA) I polypeptide A, 194kDa
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000068654 POLR1A 9606 - 2:86020216-86106155 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000263857 POLR1A-001 86020216-86106155 protein_coding
  ENST00000409024 POLR1A-004 86083082-86105874 nonsense_mediated_decay
  ENST00000409681 POLR1A-002 86026328-86106155 protein_coding
  ENST00000424089 POLR1A-005 86081617-86105886 nonsense_mediated_decay
  ENST00000462078 POLR1A-008 86039325-86040519 processed_transcript
  ENST00000471427 POLR1A-011 86027966-86028799 processed_transcript
  ENST00000483538 POLR1A-006 86054138-86065714 processed_transcript
  ENST00000486964 POLR1A-003 86078041-86105873 retained_intron
  ENST00000492034 POLR1A-009 86031504-86038917 processed_transcript
  ENST00000496892 POLR1A-010 86031421-86037070 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000263857ENST00000409681ENST00000486964ENST00000492034
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000263857 N/A 1.967±0.00 0.376±0.00 1.412±0.00 N/A 0.819±0.00 0.399±0.11 0.506±0.00 0.884±0.00 0.622±0.00 N/A 1.252±0.00 N/A 2.155±0.01
ENST00000409681 2.770±0.00 N/A 0.927±0.00 0.807±0.00 1.729±0.34 1.684±0.50 0.820±0.30 2.131±0.00 1.227±0.09 1.078±0.35 2.504±1.55 2.963±0.87 2.846±0.39 2.348±0.01
ENST00000486964 N/A N/A 1.886±0.00 2.056±0.00 3.711±0.00 5.240±0.00 1.687±0.00 3.413±0.00 4.060±0.00 2.756±0.00 2.602±0.00 8.237±0.00 N/A N/A
ENST00000492034 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.138±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WR CIL_0007WR_0001 VISTA 2:85469895-86073896
CIL_00084P CIL_00084P_0001 VISTA 2:85470344-86073882

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001054 IBA RNA polymerase I activity
GO:0003677 IEA DNA binding
GO:0003899 IEA DNA-directed RNA polymerase activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005730 IDA nucleolus
GO:0005736 IEA DNA-directed RNA polymerase I complex
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006360 TAS transcription from RNA polymerase I promoter
GO:0006361 TAS transcription initiation from RNA polymerase I promoter
GO:0006362 TAS transcription elongation from RNA polymerase I promoter
GO:0006363 TAS termination of RNA polymerase I transcription
GO:0008270 IEA zinc ion binding
GO:0010467 TAS gene expression

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000029172 polr1a polymerase (RNA) I polypeptide A protein_coding Danio_rerio
ENSMUSG00000049553 Polr1a polymerase (RNA) I polypeptide A protein_coding Mus_musculus

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