C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ST6 beta-galactosamide alpha-2,6-sialyltranferase 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000073849 ST6GAL1 9606 + 3:186930485-187078553 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000169298 ST6GAL1-001 186930485-187078553 protein_coding
  ENST00000416235 ST6GAL1-018 187024688-187042927 protein_coding
  ENST00000417392 ST6GAL1-011 186931352-187043043 protein_coding
  ENST00000423451 ST6GAL1-015 187025479-187043084 protein_coding
  ENST00000427315 ST6GAL1-007 186930534-187074204 protein_coding
  ENST00000430309 ST6GAL1-009 186931087-187042831 protein_coding
  ENST00000438590 ST6GAL1-012 186974957-187042995 protein_coding
  ENST00000440338 ST6GAL1-017 187021855-187042839 protein_coding
  ENST00000442023 ST6GAL1-020 187043743-187075622 protein_coding
  ENST00000446170 ST6GAL1-016 187025483-187042977 protein_coding
  ENST00000448044 ST6GAL1-002 187021856-187078553 protein_coding
  ENST00000448408 ST6GAL1-013 186986316-187042998 protein_coding
  ENST00000448449 ST6GAL1-019 187043016-187075852 nonsense_mediated_decay
  ENST00000455441 ST6GAL1-006 186930532-187072901 protein_coding
  ENST00000457772 ST6GAL1-201 186930526-187078553 protein_coding
  ENST00000458216 ST6GAL1-010 186930779-187042780 protein_coding
  ENST00000463542 ST6GAL1-004 186930502-186963887 processed_transcript
  ENST00000464827 ST6GAL1-021 187043108-187051539 retained_intron
  ENST00000468614 ST6GAL1-008 186930773-186964364 retained_intron
  ENST00000470633 ST6GAL1-003 187071974-187078551 retained_intron
  ENST00000485105 ST6GAL1-014 186996622-187006551 processed_transcript
  ENST00000487031 ST6GAL1-005 186930526-186963812 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENST00000169298ENST00000448044ENST00000448449ENST00000457772
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENST00000169298 4.814±0.00 N/A N/A 2.019±0.00 1.832±0.60 1.112±0.00 4.148±2.10 N/A N/A 7.653±0.00 1.602±0.00 8.590±0.30 1.245±0.56
ENST00000448044 N/A 7.119±0.00 2.784±0.00 3.669±0.00 N/A N/A N/A 45.693±38.73 N/A N/A N/A 31.289±0.00 N/A
ENST00000448449 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.968±0.00 N/A N/A
ENST00000457772 2.392±0.00 10.105±0.00 N/A 3.649±0.00 N/A 6.436±0.00 4.108±0.00 12.411±2.11 38.952±0.00 6.625±0.00 2.712±0.00 12.896±8.26 4.806±1.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008LA CIL_0008LA_0001 VISTA 3:186647123-187250687

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000139 TAS Golgi membrane
GO:0003835 IDA beta-galactoside alpha-2,6-sialyltransferase activity
GO:0005794 IEA Golgi apparatus
GO:0006054 IDA N-acetylneuraminate metabolic process
GO:0006486 IEA protein glycosylation
GO:0006959 TAS humoral immune response
GO:0008373 IDA:IEA sialyltransferase activity
GO:0016021 IEA integral component of membrane
GO:0016266 TAS O-glycan processing
GO:0018279 IDA protein N-linked glycosylation via asparagine
GO:0030173 IEA integral component of Golgi membrane
GO:0043687 TAS post-translational protein modification
GO:0044267 TAS cellular protein metabolic process
GO:0070062 IDA extracellular vesicular exosome
GO:0097503 IEA:IDA sialylation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000044514 st6gal1 ST6 beta-galactosamide alpha-2,6-sialyltranferase 1 protein_coding Danio_rerio
ENSMUSG00000022885 St6gal1 beta galactoside alpha 2,6 sialyltransferase 1 protein_coding Mus_musculus

Loading