C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: zinc finger protein 638
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000075292 ZNF638 9606 + 2:71276561-71435069 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000264447 ZNF638-001 71331764-71435061 protein_coding
  ENST00000409407 ZNF638-018 71407239-71435060 processed_transcript
  ENST00000409544 ZNF638-002 71331764-71435061 protein_coding
  ENST00000410075 ZNF638-003 71276593-71395670 protein_coding
  ENST00000417778 ZNF638-013 71331782-71349042 protein_coding
  ENST00000434786 ZNF638-030 71373938-71376320 processed_transcript
  ENST00000437658 ZNF638-006 71331728-71349545 protein_coding
  ENST00000454122 ZNF638-007 71331782-71349063 protein_coding
  ENST00000454278 ZNF638-014 71331766-71349141 protein_coding
  ENST00000455226 ZNF638-012 71331766-71349141 protein_coding
  ENST00000460310 ZNF638-025 71431183-71433566 retained_intron
  ENST00000461991 ZNF638-023 71427283-71435069 protein_coding
  ENST00000464375 ZNF638-010 71331760-71365538 protein_coding
  ENST00000466330 ZNF638-005 71276645-71365613 protein_coding
  ENST00000466975 ZNF638-004 71276593-71365488 protein_coding
  ENST00000472758 ZNF638-022 71427350-71434869 retained_intron
  ENST00000475743 ZNF638-011 71331762-71365514 protein_coding
  ENST00000483421 ZNF638-019 71418222-71435052 retained_intron
  ENST00000486494 ZNF638-015 71379516-71380720 retained_intron
  ENST00000487638 ZNF638-017 71395719-71435058 retained_intron
  ENST00000487707 ZNF638-008 71331782-71348838 processed_transcript
  ENST00000488126 ZNF638-024 71431023-71435058 retained_intron
  ENST00000491843 ZNF638-016 71380176-71398757 retained_intron
  ENST00000492262 ZNF638-021 71427295-71428963 retained_intron
  ENST00000493576 ZNF638-020 71426846-71435058 protein_coding
  ENST00000494241 ZNF638-028 71403850-71426606 retained_intron
  ENST00000494621 ZNF638-009 71276561-71365705 protein_coding
  ENST00000601581 ZNF638-029 71365429-71375335 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000264447ENST00000409407ENST00000409544ENST00000410075ENST00000472758ENST00000483421ENST00000487638ENST00000493576
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000264447 3.865±0.00 2.630±0.00 2.759±0.00 7.907±3.68 3.897±0.91 4.969±2.49 4.456±0.33 4.671±1.14 3.698±2.27 4.652±3.44 4.122±0.69 7.143±4.69 2.771±0.57 6.483±0.37
ENST00000409407 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.286±0.00 N/A
ENST00000409544 N/A N/A N/A N/A N/A N/A N/A N/A 3.057±0.00 N/A N/A N/A N/A N/A
ENST00000410075 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.388±0.00 2.751±0.00 N/A 1.382±0.00 N/A
ENST00000472758 N/A N/A N/A N/A N/A 13.768±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483421 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.343±0.00 4.879±0.00 N/A
ENST00000487638 N/A N/A N/A N/A 4.981±1.13 2.239±0.00 N/A N/A 0.884±0.00 N/A N/A 5.267±1.71 3.751±0.00 6.429±0.00
ENST00000493576 N/A N/A N/A N/A 9.810±0.00 5.913±0.00 N/A 14.058±0.00 3.842±0.00 5.727±0.00 N/A 16.239±2.82 5.072±0.00 17.965±2.48

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003C3 CIL_0003C3_0001 CGP 2:71182739-71435069
CIL_0003BS CIL_0003BS_0001 CGP 2:71276561-71686768

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003690 TAS double-stranded DNA binding
GO:0003723 TAS RNA binding
GO:0005634 IDA:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 TAS cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0008380 TAS RNA splicing
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000030016 Zfml zinc finger, matrin-like protein_coding Mus_musculus

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