C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: VPS9 domain containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000075399 VPS9D1 9606 - 16:89707134-89720986 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000389386 VPS9D1-002 89707134-89720986 protein_coding
  ENST00000561976 VPS9D1-001 89707134-89719369 protein_coding
  ENST00000563798 VPS9D1-003 89711393-89720885 nonsense_mediated_decay
  ENST00000565023 VPS9D1-007 89707784-89710642 protein_coding
  ENST00000565452 VPS9D1-006 89710965-89711644 processed_transcript
  ENST00000567379 VPS9D1-005 89711359-89713040 retained_intron
  ENST00000568691 VPS9D1-004 89710933-89713080 retained_intron
  ENST00000614968 VPS9D1-201 89707134-89719369 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENST00000389386ENST00000614968
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENST00000389386 2.224±0.00 N/A N/A 6.873±4.79 4.329±0.00 4.346±0.00 3.646±0.00 10.332±0.00 4.275±0.00 4.526±0.00 3.552±0.00 8.928±4.16 5.324±0.98
ENST00000614968 N/A 8.140±0.00 0.569±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.483±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00005Y CIL_00005Y_0001 CGP 16:89696343-89720986
CIL_00005Z CIL_00005Z_0001 CGP 16:89707134-89740903

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005096 IEA GTPase activator activity
GO:0005215 TAS transporter activity
GO:0015986 TAS ATP synthesis coupled proton transport
GO:0043547 IEA positive regulation of GTPase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000019195 vps9d1 VPS9 domain containing 1 protein_coding Danio_rerio
ENSMUSG00000001062 Vps9d1 VPS9 domain containing 1 protein_coding Mus_musculus

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