C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: VPS9 domain containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000389386 VPS9D1-002 ENSG00000075399 9606 - 16:89707134-89720986 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENST00000389386
Transcript ID Adipose Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENST00000389386 2.224±0.00 6.873±4.79 4.329±0.00 4.346±0.00 3.646±0.00 10.332±0.00 4.275±0.00 4.526±0.00 3.552±0.00 8.928±4.16 5.324±0.98

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00005Y CIL_00005Y_0001 CGP 16:89696343-89720986
CIL_00005Z CIL_00005Z_0001 CGP 16:89707134-89740903

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005096 IEA GTPase activator activity
GO:0005215 TAS transporter activity
GO:0015986 TAS ATP synthesis coupled proton transport
GO:0043547 IEA positive regulation of GTPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000130275 Vps9d1-006 retained_intron Mus_musculus 0 913
ENSMUST00000122363 Vps9d1-001 protein_coding Mus_musculus 0 913
ENSMUST00000117643 Vps9d1-003 protein_coding Mus_musculus 0 913
ENSMUST00000118279 Vps9d1-007 protein_coding Mus_musculus 0 905
ENSMUST00000146136 Vps9d1-004 retained_intron Mus_musculus 0 835
ENSMUST00000155869 Vps9d1-005 nonsense_mediated_decay Mus_musculus 0 833
ENSMUST00000149490 Vps9d1-002 retained_intron Mus_musculus 0 654
ENSMUST00000130965 Vps9d1-010 retained_intron Mus_musculus 0 200

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