C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: fibronectin type III domain containing 3B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000075420 FNDC3B 9606 + 3:172039628-172401665 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000336824 FNDC3B-001 172040554-172401665 protein_coding
  ENST00000415807 FNDC3B-004 172039628-172398771 protein_coding
  ENST00000416957 FNDC3B-003 172046913-172397481 protein_coding
  ENST00000421757 FNDC3B-002 172039628-172187298 protein_coding
  ENST00000423424 FNDC3B-008 172040555-172186834 protein_coding
  ENST00000443501 FNDC3B-006 172126974-172251456 protein_coding
  ENST00000469491 FNDC3B-005 172039659-172338324 retained_intron
  ENST00000476794 FNDC3B-011 172148535-172187218 processed_transcript
  ENST00000478016 FNDC3B-010 172126973-172227263 retained_intron
  ENST00000483344 FNDC3B-012 172306936-172310927 retained_intron
  ENST00000490832 FNDC3B-009 172345895-172352878 retained_intron
  ENST00000494000 FNDC3B-007 172329074-172335814 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000336824ENST00000415807ENST00000416957ENST00000443501
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000336824 3.108±0.00 0.866±0.16 7.404±0.00 5.385±0.00 N/A 4.391±0.00 6.466±0.00 5.444±0.00 N/A 5.330±3.08 11.378±5.85 N/A
ENST00000415807 N/A 0.551±0.00 N/A N/A N/A N/A N/A N/A 1.406±0.00 0.731±0.00 2.454±0.00 N/A
ENST00000416957 3.953±0.00 N/A 12.074±0.00 11.167±0.00 5.102±1.00 N/A 10.305±0.00 10.915±0.00 3.007±0.49 8.671±6.78 7.527±0.00 1.919±0.00
ENST00000443501 N/A 7.584±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00049P CIL_00049P_0002 CGP 3:172039628-172448456

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0016021 IEA integral component of membrane
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000062023 fndc3bb fibronectin type III domain containing 3Bb protein_coding Danio_rerio
ENSDARG00000078179 fndc3ba fibronectin type III domain containing 3Ba protein_coding Danio_rerio
ENSMUSG00000039286 Fndc3b fibronectin type III domain containing 3B protein_coding Mus_musculus

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