C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000079385 CEACAM1 9606 - 19:42507304-42561234 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000161559 CEACAM1-001 42507306-42528509 protein_coding
  ENST00000344391 CEACAM1-005 42518516-42528449 retained_intron
  ENST00000352591 CEACAM1-011 42507304-42528446 protein_coding
  ENST00000358394 CEACAM1-012 42509103-42528466 protein_coding
  ENST00000377806 CEACAM1-003 42518516-42528469 retained_intron
  ENST00000403136 CEACAM1-004 42520542-42528469 retained_intron
  ENST00000403444 CEACAM1-002 42507314-42528478 protein_coding
  ENST00000403461 CEACAM1-006 42509092-42528380 protein_coding
  ENST00000465051 CEACAM1-010 42509104-42511084 retained_intron
  ENST00000471298 CEACAM1-007 42527062-42527822 protein_coding
  ENST00000485605 CEACAM1-008 42510889-42519463 retained_intron
  ENST00000488639 CEACAM1-009 42509100-42512411 processed_transcript
  ENST00000599389 CEACAM1-013 42509207-42528481 protein_coding
  ENST00000600172 CEACAM1-014 42527048-42561234 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENST00000161559ENST00000352591ENST00000403444ENST00000403461ENST00000485605
Transcript ID Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENST00000161559 11.889±0.00 N/A N/A 5.400±0.00 N/A 6.841±0.00 N/A 9.655±0.00 N/A 0.897±0.00 10.362±4.58
ENST00000352591 N/A 2.307±0.00 N/A N/A 0.659±0.00 2.593±0.00 N/A N/A 0.118±0.00 N/A 4.372±0.00
ENST00000403444 N/A N/A 2.128±0.00 11.633±0.00 N/A N/A 7.895±7.31 N/A N/A 2.752±0.21 5.515±0.94
ENST00000403461 N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.464±0.00 N/A
ENST00000485605 N/A N/A N/A N/A N/A N/A N/A 1.162±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00053L CIL_00053L_0001 CGP 19:42428288-42561234
CIL_0003UJ CIL_0003UJ_000A CGP 19:42507304-42740384

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001525 NAS angiogenesis
GO:0003674 ND molecular_function
GO:0005515 IPI:IEA protein binding
GO:0005886 TAS plasma membrane
GO:0005887 NAS integral component of plasma membrane
GO:0007156 NAS homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007229 NAS integrin-mediated signaling pathway
GO:0016020 TAS membrane
GO:0016021 IDA integral component of membrane
GO:0016477 NAS cell migration
GO:0042803 IMP protein homodimerization activity
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000041119 ceacam1 carcinoembryonic antigen-related cell adhesion molecule 1 protein_coding Danio_rerio
ENSDARG00000076981 zgc:198329 zgc:198329 protein_coding Danio_rerio
ENSDARG00000078177 cxcr3.1 chemokine (C-X-C motif) receptor 3, tandem duplicate 1 protein_coding Danio_rerio
ENSDARG00000079372 si:ch211-264f5.6 si:ch211-264f5.6 protein_coding Danio_rerio
ENSDARG00000092520 si:dkey-250k15.10 si:dkey-250k15.10 protein_coding Danio_rerio
ENSDARG00000093279 si:dkey-11o1.3 si:dkey-11o1.3 protein_coding Danio_rerio
ENSDARG00000095048 si:dkey-250k15.7 si:dkey-250k15.7 protein_coding Danio_rerio
ENSDARG00000095134 si:dkey-250k15.9 si:dkey-250k15.9 protein_coding Danio_rerio
ENSDARG00000095772 si:dkey-11o1.2 si:dkey-11o1.2 protein_coding Danio_rerio
ENSMUSG00000054385 Ceacam2 carcinoembryonic antigen-related cell adhesion molecule 2 protein_coding Mus_musculus
ENSMUSG00000074272 Ceacam1 carcinoembryonic antigen-related cell adhesion molecule 1 protein_coding Mus_musculus

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