C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00053L_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000189377-ENSG00000079385 CGP 9606 19:42428288-42561234
GeneTranscriptPositionBiotype
ENSG00000079385 (CEACAM1)
carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein) 		ENST00000161559 (CEACAM1-001) 42507306-42528509 protein_coding
ENST00000344391 (CEACAM1-005) 42518516-42528449 retained_intron
ENST00000352591 (CEACAM1-011) 42507304-42528446 protein_coding
ENST00000358394 (CEACAM1-012) 42509103-42528466 protein_coding
ENST00000377806 (CEACAM1-003) 42518516-42528469 retained_intron
ENST00000403136 (CEACAM1-004) 42520542-42528469 retained_intron
ENST00000403444 (CEACAM1-002) 42507314-42528478 protein_coding
ENST00000403461 (CEACAM1-006) 42509092-42528380 protein_coding
ENST00000465051 (CEACAM1-010) 42509104-42511084 retained_intron
ENST00000471298 (CEACAM1-007) 42527062-42527822 protein_coding
ENST00000485605 (CEACAM1-008) 42510889-42519463 retained_intron
ENST00000488639 (CEACAM1-009) 42509100-42512411 processed_transcript
ENST00000599389 (CEACAM1-013) 42509207-42528481 protein_coding
ENST00000600172 (CEACAM1-014) 42527048-42561234 protein_coding
ENSG00000189377 (CXCL17)
chemokine (C-X-C motif) ligand 17 		ENST00000341918 (CXCL17-002) 42428533-42442852 nonsense_mediated_decay
ENST00000601181 (CXCL17-001) 42428288-42443048 protein_coding
ENSG00000230558 (CEACAMP2)
carcinoembryonic antigen-related cell adhesion molecule pseudogene 2 		ENST00000457904 (CEACAMP2-001) 42560433-42561750 unprocessed_pseudogene
ENSG00000253048 (RNU4-60P)
RNA, U4 small nuclear 60, pseudogene 		ENST00000517239 (RNU4-60P-201) 42472875-42473009 snRNA
ENSG00000269374 (CTB-50E14.5)
 ENST00000600255 (CTB-50E14.5-001) 42485076-42485714 processed_pseudogene
CIL_00053L_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000060188-ENSMUSG00000074272 CGP 10090 7:25400053-25477625
GeneTranscriptPositionBiotype
ENSMUSG00000060188 (Cxcl17)
chemokine (C-X-C motif) ligand 17 		ENSMUST00000074040 (Cxcl17-201) 25400053-25412886 protein_coding
ENSMUSG00000074272 (Ceacam1)
carcinoembryonic antigen-related cell adhesion molecule 1 		ENSMUST00000098666 (Ceacam1-201) 25461702-25477625 protein_coding
ENSMUST00000098668 (Ceacam1-202) 25461702-25477625 protein_coding
ENSMUST00000098669 (Ceacam1-203) 25461702-25477625 protein_coding
ENSMUSG00000081732 (Gm15495)
predicted gene 15495 		ENSMUST00000117570 (Gm15495-001) 25442152-25443463 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00053L_0001ENSG00000079385ENST00000161559ENST00000344391ENST00000352591ENST00000358394ENST00000377806ENST00000403136ENST00000403444ENST00000403461ENST00000465051ENST00000471298ENST00000485605ENST00000488639ENST00000599389ENST00000600172ENSG00000189377ENST00000341918ENST00000601181ENSG00000230558ENST00000457904ENSG00000253048ENST00000517239ENSG00000269374ENST00000600255CIL_00053L_0002ENSMUSG00000060188ENSMUST00000074040ENSMUSG00000074272ENSMUST00000098666ENSMUST00000098668ENSMUST00000098669ENSMUSG00000081732ENSMUST00000117570
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00053L_0001ENSG00000079385ENST00000161559ENST00000352591ENST00000403444ENST00000403461ENST00000485605ENSG00000189377ENST00000341918ENST00000601181ENSG00000230558ENST00000457904ENSG00000253048ENST00000517239ENSG00000269374ENST00000600255CIL_00053L_0002ENSMUSG00000060188ENSMUST00000074040ENSMUSG00000074272ENSMUST00000098666ENSMUST00000098668ENSMUST00000098669ENSMUSG00000081732ENSMUST00000117570
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000079385 ENST00000161559 N/A 11.889±0.00 N/A N/A N/A 5.400±0.00 N/A 6.841±0.00 N/A 9.655±0.00 N/A 0.897±0.00 10.362±4.58 N/A
ENST00000344391 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000352591 N/A N/A 2.307±0.00 N/A N/A N/A 0.659±0.00 2.593±0.00 N/A N/A 0.118±0.00 N/A 4.372±0.00 N/A
ENST00000358394 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000377806 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000403136 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000403444 N/A N/A N/A N/A 2.128±0.00 11.633±0.00 N/A N/A 7.895±7.31 N/A N/A 2.752±0.21 5.515±0.94 N/A
ENST00000403461 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.464±0.00 N/A N/A
ENST00000465051 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471298 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485605 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.162±0.00 N/A N/A N/A N/A
ENST00000488639 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000599389 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000600172 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000189377 ENST00000341918 N/A 0.085±0.00 N/A N/A 0.901±0.21 N/A 0.260±0.00 0.738±0.00 N/A 60.229±0.00 N/A 1.618±0.67 N/A 1.366±0.00
ENST00000601181 0.123±0.00 N/A N/A 0.070±0.03 0.458±0.04 N/A 0.023±0.00 0.320±0.00 N/A 9.202±3.27 N/A 1.177±0.88 0.071±0.00 0.208±0.05
ENSG00000230558 ENST00000457904 N/A 0.187±0.00 N/A 0.324±0.00 N/A N/A N/A N/A N/A N/A 0.147±0.00 N/A N/A 0.136±0.00
ENSG00000253048 ENST00000517239 N/A N/A N/A 0.136±0.00 0.641±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.397±0.00
ENSG00000269374 ENST00000600255 N/A N/A N/A 7.505±0.00 N/A N/A 3.760±0.00 N/A N/A N/A 12.415±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000060188 ENSMUST00000074040 6.794±6.79 N/A 0.070±0.02 0.041±0.01 2.648±0.88 0.149±0.05 2.478±1.73 0.073±0.04 0.011±0.00 25.344±5.26 0.093±0.00 4.616±2.16 0.064±0.05 0.128±0.03
ENSMUSG00000074272 ENSMUST00000098666 1.271±0.09 0.676±0.25 0.601±0.19 0.051±0.00 1.736±0.60 443.788±51.58 0.696±0.14 5.018±1.33 13.969±10.95 4.502±0.67 0.262±0.09 0.846±0.48 1.579±1.05 0.059±0.02
ENSMUST00000098668 1.947±1.25 2.161±0.98 0.682±0.38 0.173±0.03 1.187±0.13 69.579±2.88 0.860±0.28 2.838±0.48 5.492±3.08 5.939±0.51 0.727±0.27 1.366±0.71 0.945±0.56 0.121±0.02
ENSMUST00000098669 N/A N/A N/A N/A 1.298±0.00 N/A N/A N/A 1.429±1.42 N/A N/A N/A 0.305±0.00 0.093±0.00
ENSMUSG00000081732 ENSMUST00000117570 0.090±0.00 N/A 0.018±0.01 0.036±0.01 0.110±0.03 0.461±0.28 0.068±0.04 0.097±0.04 0.041±0.04 0.115±0.02 N/A 0.081±0.09 0.020±0.01 0.173±0.06

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