C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: erythrocyte membrane protein band 4.1-like 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000082397 EPB41L3 9606 - 18:5392381-5630700 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000341928 EPB41L3-001 5392384-5544242 protein_coding
  ENST00000342933 EPB41L3-201 5392381-5544310 protein_coding
  ENST00000400111 EPB41L3-202 5392846-5543969 protein_coding
  ENST00000540638 EPB41L3-004 5393093-5544281 protein_coding
  ENST00000542652 EPB41L3-034 5392386-5466363 processed_transcript
  ENST00000544123 EPB41L3-203 5392381-5540556 protein_coding
  ENST00000545076 EPB41L3-002 5393103-5628991 processed_transcript
  ENST00000578196 EPB41L3-030 5400869-5419838 processed_transcript
  ENST00000578395 EPB41L3-028 5406848-5420206 processed_transcript
  ENST00000578431 EPB41L3-016 5478354-5630700 processed_transcript
  ENST00000578432 EPB41L3-018 5429248-5433559 processed_transcript
  ENST00000578503 EPB41L3-009 5445140-5489250 protein_coding
  ENST00000578524 EPB41L3-023 5396199-5419813 processed_transcript
  ENST00000578618 EPB41L3-003 5392386-5399566 retained_intron
  ENST00000579271 EPB41L3-024 5397395-5419801 processed_transcript
  ENST00000579951 EPB41L3-032 5394783-5396334 protein_coding
  ENST00000580179 EPB41L3-033 5478383-5540424 protein_coding
  ENST00000580308 EPB41L3-007 5478241-5489370 protein_coding
  ENST00000580316 EPB41L3-025 5398113-5423407 processed_transcript
  ENST00000580647 EPB41L3-022 5397398-5419794 processed_transcript
  ENST00000580866 EPB41L3-006 5445140-5489047 retained_intron
  ENST00000580989 EPB41L3-011 5478247-5521423 protein_coding
  ENST00000581292 EPB41L3-020 5397158-5419800 processed_transcript
  ENST00000581387 EPB41L3-021 5397393-5419815 processed_transcript
  ENST00000581454 EPB41L3-005 5445140-5488939 processed_transcript
  ENST00000581661 EPB41L3-027 5416276-5428350 processed_transcript
  ENST00000581757 EPB41L3-029 5431212-5434121 processed_transcript
  ENST00000581833 EPB41L3-014 5478272-5540472 protein_coding
  ENST00000582592 EPB41L3-017 5478399-5577648 protein_coding
  ENST00000582703 EPB41L3-010 5478350-5540415 protein_coding
  ENST00000582729 EPB41L3-026 5400997-5416151 processed_transcript
  ENST00000584015 EPB41L3-015 5478241-5543420 protein_coding
  ENST00000584055 EPB41L3-031 5397248-5407328 retained_intron
  ENST00000584651 EPB41L3-012 5445140-5528999 protein_coding
  ENST00000584670 EPB41L3-019 5419799-5540396 protein_coding
  ENST00000585142 EPB41L3-013 5478283-5540556 protein_coding

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Gene structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000342933ENST00000400111ENST00000540638ENST00000542652ENST00000544123ENST00000545076ENST00000578395ENST00000578524ENST00000578618ENST00000581757
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000342933 N/A N/A 4.874±0.00 N/A N/A N/A N/A N/A N/A N/A 0.477±0.00 N/A N/A
ENST00000400111 N/A N/A N/A N/A N/A N/A N/A 0.969±0.00 2.344±0.00 0.944±0.00 1.635±0.00 13.070±0.00 19.755±0.00
ENST00000540638 10.933±0.00 N/A 21.034±0.00 4.809±0.00 5.273±1.65 0.473±0.00 N/A 1.208±0.88 2.305±0.00 N/A 2.335±1.81 N/A 16.478±4.60
ENST00000542652 14.415±0.00 3.287±0.00 10.106±3.11 4.938±0.00 10.368±0.00 1.701±0.00 0.474±0.00 1.255±0.25 7.885±0.00 1.559±0.00 2.437±1.97 6.966±3.86 17.633±0.00
ENST00000544123 N/A 1.704±0.00 N/A N/A N/A N/A N/A 1.014±0.00 N/A N/A 1.246±0.00 N/A 3.701±0.00
ENST00000545076 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.215±0.00 N/A N/A N/A
ENST00000578395 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.705±0.00 N/A N/A N/A
ENST00000578524 N/A N/A 58.282±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000578618 N/A N/A N/A N/A N/A N/A 0.710±0.00 N/A N/A N/A 0.411±0.00 N/A N/A
ENST00000581757 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 65.122±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005QZ CIL_0005QZ_0002 CGP 18:5392381-5895955

Gene Ontology
GO IDEvidence TypeGO Description
GO:0002175 ISS protein localization to paranode region of axon
GO:0003779 IEA actin binding
GO:0005198 IEA structural molecule activity
GO:0005200 TAS structural constituent of cytoskeleton
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0005886 IDA plasma membrane
GO:0005911 IDA cell-cell junction
GO:0006915 IEA apoptotic process
GO:0007016 TAS cytoskeletal anchoring at plasma membrane
GO:0008092 IEA cytoskeletal protein binding
GO:0008150 ND biological_process
GO:0008360 ISS regulation of cell shape
GO:0019898 IEA extrinsic component of membrane
GO:0030673 ISS axolemma
GO:0030865 TAS cortical cytoskeleton organization
GO:0030866 IEA cortical actin cytoskeleton organization
GO:0030913 ISS paranodal junction assembly
GO:0033270 ISS paranode region of axon
GO:0043217 ISS myelin maintenance
GO:0044224 ISS juxtaparanode region of axon
GO:0048812 ISS neuron projection morphogenesis
GO:0071205 ISS protein localization to juxtaparanode region of axon
GO:0072659 ISS protein localization to plasma membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000002255 CABZ01090303.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000019917 epb41l3b erythrocyte membrane protein band 4.1-like 3b protein_coding Danio_rerio
ENSMUSG00000024044 Epb4.1l3 erythrocyte protein band 4.1-like 3 protein_coding Mus_musculus

Loading