C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: erythrocyte membrane protein band 4.1-like 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000540638 EPB41L3-004 ENSG00000082397 9606 - 18:5393093-5544281 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartLiverLungOvaryTestisENST00000540638
Transcript ID Adipose Brain Breast Colon Heart Liver Lung Ovary Testis
ENST00000540638 10.933±0.00 21.034±0.00 4.809±0.00 5.273±1.65 0.473±0.00 1.208±0.88 2.305±0.00 2.335±1.81 16.478±4.60

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005QZ CIL_0005QZ_0002 CGP 18:5392381-5895955

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002175 ISS protein localization to paranode region of axon
GO:0003779 IEA actin binding
GO:0005198 IEA structural molecule activity
GO:0005200 TAS structural constituent of cytoskeleton
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0005886 IDA plasma membrane
GO:0005911 IDA cell-cell junction
GO:0006915 IEA apoptotic process
GO:0007016 TAS cytoskeletal anchoring at plasma membrane
GO:0008092 IEA cytoskeletal protein binding
GO:0008150 ND biological_process
GO:0008360 ISS regulation of cell shape
GO:0019898 IEA extrinsic component of membrane
GO:0030673 ISS axolemma
GO:0030865 TAS cortical cytoskeleton organization
GO:0030866 IEA cortical actin cytoskeleton organization
GO:0030913 ISS paranodal junction assembly
GO:0033270 ISS paranode region of axon
GO:0043217 ISS myelin maintenance
GO:0044224 ISS juxtaparanode region of axon
GO:0048812 ISS neuron projection morphogenesis
GO:0071205 ISS protein localization to juxtaparanode region of axon
GO:0072659 ISS protein localization to plasma membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000080208 Epb4.1l3-201 protein_coding Mus_musculus 0 1783
ENSMUST00000112680 Epb4.1l3-202 protein_coding Mus_musculus 0 1783
ENSDART00000134695 si:ch73-18b11.1-002 protein_coding Danio_rerio 0.000000000000002 90

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