C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cordon-bleu WH2 repeat protein-like 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000082438 COBLL1 9606 - 2:164653624-164843679 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000342193 COBLL1-004 164684765-164841412 protein_coding
  ENST00000375458 COBLL1-003 164680188-164841418 protein_coding
  ENST00000392717 COBLL1-201 164680186-164842168 protein_coding
  ENST00000409184 COBLL1-001 164684816-164842025 protein_coding
  ENST00000414843 COBLL1-020 164729930-164841850 protein_coding
  ENST00000434366 COBLL1-021 164704952-164841823 processed_transcript
  ENST00000439313 COBLL1-018 164728161-164841221 protein_coding
  ENST00000444537 COBLL1-008 164728185-164841823 protein_coding
  ENST00000445474 COBLL1-019 164730060-164842174 protein_coding
  ENST00000448708 COBLL1-016 164728159-164843679 protein_coding
  ENST00000452626 COBLL1-011 164722306-164773754 protein_coding
  ENST00000456171 COBLL1-015 164700553-164841823 nonsense_mediated_decay
  ENST00000456693 COBLL1-007 164722492-164842114 protein_coding
  ENST00000460238 COBLL1-022 164700678-164705377 retained_intron
  ENST00000474975 COBLL1-014 164721817-164722491 retained_intron
  ENST00000480873 COBLL1-012 164743189-164773733 retained_intron
  ENST00000483743 COBLL1-009 164743454-164841984 retained_intron
  ENST00000489955 COBLL1-006 164685821-164698300 retained_intron
  ENST00000491126 COBLL1-017 164700607-164842404 processed_transcript
  ENST00000493713 COBLL1-023 164692637-164694737 processed_transcript
  ENST00000493868 COBLL1-005 164684825-164725007 retained_intron
  ENST00000493921 COBLL1-013 164738246-164772046 processed_transcript
  ENST00000495084 COBLL1-024 164653624-164692346 processed_transcript
  ENST00000496396 COBLL1-002 164743454-164842140 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000342193ENST00000375458ENST00000392717ENST00000409184ENST00000456693ENST00000489955ENST00000493868
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000342193 N/A 1.582±0.00 N/A 0.545±0.18 3.128±0.00 0.968±0.00 N/A 5.140±0.00 N/A 2.428±0.00 N/A N/A 5.422±2.24 0.951±0.00
ENST00000375458 N/A N/A 3.064±0.00 N/A 1.478±0.59 0.282±0.00 N/A N/A 1.296±0.22 N/A 0.191±0.03 0.713±0.09 2.588±0.27 0.711±0.00
ENST00000392717 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.870±0.00 N/A N/A
ENST00000409184 3.894±0.00 2.298±0.00 4.539±0.00 1.237±0.00 14.362±0.00 1.877±0.00 1.556±0.00 19.301±0.00 8.349±0.00 4.904±0.00 0.706±0.00 2.594±0.47 10.111±2.93 1.471±1.21
ENST00000456693 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.600±0.00 N/A N/A N/A
ENST00000489955 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.999±0.00 N/A N/A N/A N/A
ENST00000493868 N/A N/A 3.680±0.00 N/A N/A 0.672±0.00 0.371±0.00 N/A N/A 1.661±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003S1 CIL_0003S1_0002 CGP 2:164492812-164843679
CIL_0006CM CIL_0006CM_0001 CGP 2:164653624-164955525

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000088979 COBLL1 (1 of 2) cordon-bleu WH2 repeat protein-like 1 protein_coding Danio_rerio
ENSDARG00000089858 COBLL1 (2 of 2) cordon-bleu WH2 repeat protein-like 1 protein_coding Danio_rerio
ENSMUSG00000034903 Cobll1 Cobl-like 1 protein_coding Mus_musculus

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