C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: TNF receptor-associated factor 5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000082512 TRAF5 9606 + 1:211326615-211374946 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000261464 TRAF5-001 211326837-211374946 protein_coding
  ENST00000336184 TRAF5-201 211326615-211374940 protein_coding
  ENST00000367004 TRAF5-006 211346364-211372795 protein_coding
  ENST00000462410 TRAF5-002 211326615-211365509 processed_transcript
  ENST00000473385 TRAF5-003 211368929-211374785 processed_transcript
  ENST00000488428 TRAF5-004 211326698-211361148 processed_transcript
  ENST00000494355 TRAF5-005 211326833-211353618 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000261464ENST00000367004ENST00000462410ENST00000473385
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000261464 0.895±0.00 7.232±0.00 N/A 0.681±0.04 1.520±0.00 1.156±0.17 0.601±0.00 0.734±0.68 0.075±0.00 0.784±0.27 0.157±0.00 8.168±7.39 1.695±0.26 1.105±0.00
ENST00000367004 N/A N/A 0.347±0.00 0.470±0.00 3.362±0.00 2.796±0.00 0.395±0.00 N/A 2.057±0.00 2.011±0.00 0.164±0.00 5.485±0.00 N/A 3.316±1.09
ENST00000462410 N/A N/A N/A N/A N/A 0.465±0.00 0.058±0.00 N/A N/A N/A N/A 1.143±0.00 N/A N/A
ENST00000473385 0.572±0.00 8.911±0.00 N/A 0.638±0.12 2.823±1.85 1.169±0.31 0.214±0.02 0.877±0.49 0.865±0.64 0.687±0.16 N/A 4.462±0.98 0.433±0.00 1.042±0.09

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004842 IEA ubiquitin-protein transferase activity
GO:0004871 IEA signal transducer activity
GO:0005515 IPI:IEA protein binding
GO:0005737 IDA cytoplasm
GO:0005813 IDA centrosome
GO:0005829 IDA cytosol
GO:0006915 IEA apoptotic process
GO:0007165 IEA signal transduction
GO:0008270 IEA zinc ion binding
GO:0008284 IEA positive regulation of cell proliferation
GO:0009898 ISS cytoplasmic side of plasma membrane
GO:0016567 IEA protein ubiquitination
GO:0031625 IPI ubiquitin protein ligase binding
GO:0031996 IPI thioesterase binding
GO:0035631 ISS CD40 receptor complex
GO:0042981 IEA regulation of apoptotic process
GO:0043123 IEP positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0051091 IMP positive regulation of sequence-specific DNA binding transcription factor activity
GO:0051092 IMP positive regulation of NF-kappaB transcription factor activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000017240 traf5 Tnf receptor-associated factor 5 protein_coding Danio_rerio
ENSMUSG00000026637 Traf5 TNF receptor-associated factor 5 protein_coding Mus_musculus

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