C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Rho GTPase activating protein 28
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000088756 ARHGAP28 9606 + 18:6729718-6915716 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000262227 ARHGAP28-003 6788494-6898719 protein_coding
  ENST00000314319 ARHGAP28-201 6837193-6915700 protein_coding
  ENST00000383472 ARHGAP28-006 6729718-6912155 protein_coding
  ENST00000419673 ARHGAP28-001 6834475-6915716 protein_coding
  ENST00000531294 ARHGAP28-004 6834480-6912415 protein_coding
  ENST00000532723 ARHGAP28-005 6774002-6837378 protein_coding
  ENST00000532996 ARHGAP28-002 6850791-6898721 protein_coding
  ENST00000577524 ARHGAP28-012 6837197-6870661 nonsense_mediated_decay
  ENST00000579245 ARHGAP28-010 6873481-6882361 retained_intron
  ENST00000579689 ARHGAP28-016 6873466-6890048 protein_coding
  ENST00000579796 ARHGAP28-009 6896760-6898719 retained_intron
  ENST00000581099 ARHGAP28-015 6834475-6868234 protein_coding
  ENST00000583410 ARHGAP28-007 6729946-6824964 protein_coding
  ENST00000584287 ARHGAP28-013 6837197-6870646 nonsense_mediated_decay
  ENST00000584387 ARHGAP28-008 6730043-6851107 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000262227ENST00000314319ENST00000383472ENST00000419673ENST00000532723ENST00000532996ENST00000577524ENST00000579796ENST00000584387
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000262227 N/A 0.172±0.00 N/A 0.175±0.00 0.122±0.00 0.012±0.00 N/A 0.290±0.28 0.283±0.00 N/A 0.335±0.00 N/A N/A
ENST00000314319 1.610±0.00 0.599±0.00 0.458±0.00 1.000±0.44 0.475±0.00 0.132±0.00 0.533±0.45 N/A 0.730±0.00 0.820±0.72 1.499±0.96 2.372±1.01 N/A
ENST00000383472 N/A N/A N/A N/A N/A N/A N/A 0.498±0.00 N/A N/A N/A N/A N/A
ENST00000419673 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.645±1.37
ENST00000532723 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.574±0.00 N/A
ENST00000532996 N/A N/A N/A N/A N/A 0.036±0.00 0.114±0.00 N/A N/A N/A N/A N/A N/A
ENST00000577524 N/A N/A N/A N/A 3.036±0.00 0.194±0.00 N/A N/A N/A N/A N/A N/A 29.079±0.00
ENST00000579796 N/A N/A 0.093±0.00 N/A N/A 0.053±0.00 N/A 0.065±0.00 N/A N/A N/A N/A N/A
ENST00000584387 N/A N/A N/A 3.580±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005096 IEA GTPase activator activity
GO:0005622 IEA intracellular
GO:0005634 IDA nucleus
GO:0005829 TAS cytosol
GO:0007165 IEA signal transduction
GO:0007264 TAS small GTPase mediated signal transduction
GO:0030054 IDA cell junction
GO:0043547 IEA positive regulation of GTPase activity
GO:0051056 TAS regulation of small GTPase mediated signal transduction

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000005872 arhgap28 Rho GTPase activating protein 28 protein_coding Danio_rerio
ENSMUSG00000024043 Arhgap28 Rho GTPase activating protein 28 protein_coding Mus_musculus

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