C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: protein phosphatase 1, regulatory subunit 13B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000088808 PPP1R13B 9606 - 14:103733752-103847590 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000202556 PPP1R13B-001 103733752-103847590 protein_coding
  ENST00000553739 PPP1R13B-010 103778755-103847487 protein_coding
  ENST00000554106 PPP1R13B-008 103754165-103840107 processed_transcript
  ENST00000554136 PPP1R13B-007 103778592-103847562 retained_intron
  ENST00000554432 PPP1R13B-015 103738389-103739256 retained_intron
  ENST00000555183 PPP1R13B-012 103746374-103747384 processed_transcript
  ENST00000555391 PPP1R13B-004 103734893-103744015 processed_transcript
  ENST00000555708 PPP1R13B-013 103746708-103747356 processed_transcript
  ENST00000555734 PPP1R13B-009 103757649-103847063 protein_coding
  ENST00000555825 PPP1R13B-006 103733753-103737696 retained_intron
  ENST00000555991 PPP1R13B-011 103741992-103747397 processed_transcript
  ENST00000556325 PPP1R13B-017 103738679-103847575 processed_transcript
  ENST00000556334 PPP1R13B-005 103735114-103739272 retained_intron
  ENST00000556597 PPP1R13B-003 103733753-103746488 nonsense_mediated_decay
  ENST00000557082 PPP1R13B-002 103734892-103846885 nonsense_mediated_decay
  ENST00000557587 PPP1R13B-016 103733752-103737816 nonsense_mediated_decay
  ENST00000557744 PPP1R13B-014 103742089-103742898 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000202556ENST00000555391ENST00000555734ENST00000555825ENST00000556334ENST00000556597ENST00000557082
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000202556 2.320±0.00 3.241±0.00 0.576±0.00 2.532±1.53 2.102±0.00 3.251±0.00 10.732±8.16 2.244±1.56 0.771±0.44 4.053±1.73 5.315±0.00 5.220±5.74 3.301±1.64 16.535±1.57
ENST00000555391 N/A N/A N/A N/A N/A N/A N/A 3.425±0.00 0.664±0.00 N/A N/A N/A N/A 8.651±0.00
ENST00000555734 N/A N/A N/A 5.870±0.00 N/A N/A N/A N/A N/A N/A 1.562±0.00 3.940±0.00 N/A 49.009±0.00
ENST00000555825 N/A N/A 0.483±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556334 N/A N/A 1.207±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556597 N/A 2.129±0.00 N/A 1.979±0.00 1.732±0.00 2.164±0.00 N/A N/A N/A N/A N/A 4.544±0.00 3.197±0.29 N/A
ENST00000557082 N/A N/A N/A N/A 1.274±0.00 N/A N/A N/A N/A 0.560±0.00 N/A 0.901±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006X2 CIL_0006X2_0001 CGP 14:103715730-103847590
CIL_00019A CIL_00019A_0001 CGP 14:103733752-103928269

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005886 IDA plasma membrane
GO:0006915 IEA apoptotic process
GO:0008134 IEA transcription factor binding
GO:0045786 IEA:TAS negative regulation of cell cycle
GO:0072332 IDA intrinsic apoptotic signaling pathway by p53 class mediator

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000004377 ppp1r13ba protein phosphatase 1, regulatory subunit 13Ba protein_coding Danio_rerio
ENSDARG00000009142 ppp1r13bb protein phosphatase 1, regulatory (inhibitor) subunit 13Bb protein_coding Danio_rerio
ENSMUSG00000021285 Ppp1r13b protein phosphatase 1, regulatory (inhibitor) subunit 13B protein_coding Mus_musculus

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