C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: LIM homeobox 5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000089116 LHX5 9606 - 12:113462034-113472280 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000261731 LHX5-001 113462034-113472072 protein_coding
  ENST00000557836 LHX5-002 113471483-113472280 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; OvaryPlacentaTestisENST00000261731
Transcript ID Ovary Placenta Testis
ENST00000261731 0.267±0.28 0.956±1.07 0.072±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000842 CIL_000842_0001 VISTA 12:113363390-113966000

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0007267 IEA cell-cell signaling
GO:0008270 IEA zinc ion binding
GO:0021527 IEA spinal cord association neuron differentiation
GO:0021549 IEA cerebellum development
GO:0021702 IEA cerebellar Purkinje cell differentiation
GO:0021766 IEA hippocampus development
GO:0021846 IEA cell proliferation in forebrain
GO:0021879 IEA forebrain neuron differentiation
GO:0021937 IEA cerebellar Purkinje cell-granule cell precursor cell signaling involved in regulation of granule cell precursor cell proliferation
GO:0042127 IEA regulation of cell proliferation
GO:0043565 IEA sequence-specific DNA binding
GO:0045893 IEA positive regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000057936 lhx5 LIM homeobox 5 protein_coding Danio_rerio
ENSMUSG00000029595 Lhx5 LIM homeobox protein 5 protein_coding Mus_musculus

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