C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000842_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1571 VISTA 9606 12:113363390-113966000
GeneTranscriptPositionBiotype
ENSG00000089116 (LHX5)
LIM homeobox 5 		ENST00000261731 (LHX5-001) 113462034-113472072 protein_coding
ENST00000557836 (LHX5-002) 113471483-113472280 processed_transcript
ENSG00000122965 (RBM19)
RNA binding motif protein 19 		ENST00000261741 (RBM19-001) 113822057-113966371 protein_coding
ENST00000392561 (RBM19-002) 113822054-113966310 protein_coding
ENST00000545145 (RBM19-003) 113816742-113966306 protein_coding
ENST00000546876 (RBM19-004) 113957863-113966209 processed_transcript
ENST00000552384 (RBM19-006) 113822687-113858904 nonsense_mediated_decay
ENST00000552386 (RBM19-005) 113914969-113927431 retained_intron
ENST00000553232 (RBM19-007) 113816738-113818179 processed_transcript
ENSG00000135094 (SDS)
serine dehydratase 		ENST00000257549 (SDS-001) 113392445-113403888 protein_coding
ENST00000546639 (SDS-004) 113398837-113403886 retained_intron
ENST00000546785 (SDS-003) 113399255-113403887 retained_intron
ENST00000547342 (SDS-006) 113398515-113426301 protein_coding
ENST00000552280 (SDS-005) 113397255-113403886 protein_coding
ENST00000553112 (SDS-002) 113396640-113403886 retained_intron
ENSG00000139410 (SDSL)
serine dehydratase-like 		ENST00000345635 (SDSL-001) 113422411-113438276 protein_coding
ENST00000403593 (SDSL-002) 113422237-113438276 protein_coding
ENST00000546672 (SDSL-006) 113428419-113438241 protein_coding
ENST00000547802 (SDSL-005) 113422453-113428070 protein_coding
ENST00000551760 (SDSL-003) 113435507-113437109 protein_coding
ENST00000553248 (SDSL-004) 113422405-113436769 protein_coding
ENSG00000151176 (PLBD2)
phospholipase B domain containing 2 		ENST00000280800 (PLBD2-001) 113358570-113391625 protein_coding
ENST00000545182 (PLBD2-004) 113358566-113389238 protein_coding
ENST00000547163 (PLBD2-003) 113374866-113377086 processed_transcript
ENST00000548997 (PLBD2-002) 113358754-113374860 nonsense_mediated_decay
ENSG00000249550 (LINC01234)
long intergenic non-protein coding RNA 1234 		ENST00000510694 (LINC01234-001) 113751014-113773639 lincRNA
ENST00000547963 (LINC01234-002) 113744577-113773683 lincRNA
ENST00000550223 (LINC01234-005) 113745704-113773663 lincRNA
ENST00000550905 (LINC01234-006) 113679459-113773681 lincRNA
ENST00000551982 (LINC01234-004) 113737448-113767209 lincRNA
ENSG00000257231 (DYNLL1P4)
dynein, light chain, LC8-type 1 pseudogene 4 		ENST00000549314 (DYNLL1P4-001) 113789542-113789807 processed_pseudogene
ENSG00000257935 (LHX5-AS1)
LHX5 antisense RNA 1 (head to head) 		ENST00000551357 (LHX5-AS1-001) 113472003-113480624 antisense
CIL_000842_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1571 VISTA 10090 5:119987382-120588927
GeneTranscriptPositionBiotype
ENSMUSG00000029594 (Rbm19)
RNA binding motif protein 19 		ENSMUST00000031590 (Rbm19-201) 120116510-120197979 protein_coding
ENSMUSG00000029595 (Lhx5)
LIM homeobox protein 5 		ENSMUST00000031591 (Lhx5-001) 120431770-120441223 protein_coding
ENSMUSG00000029596 (Sdsl)
serine dehydratase-like 		ENSMUST00000031594 (Sdsl-002) 120458202-120472810 protein_coding
ENSMUST00000052258 (Sdsl-001) 120458186-120472763 protein_coding
ENSMUST00000132916 (Sdsl-003) 120460688-120467360 protein_coding
ENSMUSG00000029597 (Sds)
serine dehydratase 		ENSMUST00000066540 (Sds-001) 120476531-120483932 protein_coding
ENSMUST00000111898 (Sds-002) 120478886-120480687 protein_coding
ENSMUST00000124978 (Sds-003) 120480363-120480888 retained_intron
ENSMUSG00000029598 (Plbd2)
phospholipase B domain containing 2 		ENSMUST00000031597 (Plbd2-001) 120483282-120503625 protein_coding
ENSMUST00000131831 (Plbd2-003) 120485247-120503601 retained_intron
ENSMUST00000151361 (Plbd2-002) 120487299-120503612 retained_intron
ENSMUSG00000032741 (Tpcn1)
two pore channel 1 		ENSMUST00000046426 (Tpcn1-201) 120534160-120588613 protein_coding
ENSMUSG00000032754 (Slc8b1)
solute carrier family 8 (sodium/lithium/calcium exchanger), member B1 		ENSMUST00000068326 (Slc8b1-001) 120511168-120534024 protein_coding
ENSMUST00000076051 (Slc8b1-003) 120511252-120534020 protein_coding
ENSMUST00000111889 (Slc8b1-006) 120513143-120533057 protein_coding
ENSMUST00000111890 (Slc8b1-002) 120511235-120534019 protein_coding
ENSMUST00000123326 (Slc8b1-007) 120520779-120522220 retained_intron
ENSMUST00000140329 (Slc8b1-005) 120512868-120519751 protein_coding
ENSMUST00000147496 (Slc8b1-004) 120511270-120513188 protein_coding
ENSMUSG00000097368 (Gm10390)
predicted gene 10390 		ENSMUST00000180812 (Gm10390-201) 120121103-120139261 lincRNA
ENSMUST00000181905 (Gm10390-202) 120131485-120139263 lincRNA
ENSMUSG00000098649 (Gm27199)
predicted gene 27199 		ENSMUST00000185026 (Gm27199-001) 120419659-120431741 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000842_0001ENSG00000089116ENST00000261731ENST00000557836ENSG00000122965ENST00000261741ENST00000392561ENST00000545145ENST00000546876ENST00000552384ENST00000552386ENST00000553232ENSG00000135094ENST00000257549ENST00000546639ENST00000546785ENST00000547342ENST00000552280ENST00000553112ENSG00000139410ENST00000345635ENST00000403593ENST00000546672ENST00000547802ENST00000551760ENST00000553248ENSG00000151176ENST00000280800ENST00000545182ENST00000547163ENST00000548997ENSG00000249550ENST00000510694ENST00000547963ENST00000550223ENST00000550905ENST00000551982ENSG00000257231ENST00000549314ENSG00000257935ENST00000551357CIL_000842_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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000089116 ENST00000261731 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.267±0.28 0.956±1.07 0.072±0.03
ENST00000557836 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000122965 ENST00000261741 2.596±0.00 3.687±0.00 1.465±0.00 1.107±0.04 1.833±0.15 2.806±0.01 1.115±0.51 1.657±1.29 1.343±0.00 3.509±0.82 3.560±0.00 2.695±1.16 3.504±1.49 2.102±0.95
ENST00000392561 2.316±0.00 1.874±0.00 0.615±0.00 1.778±0.00 0.889±0.00 2.875±0.00 1.293±1.03 0.522±0.00 2.236±0.00 N/A 8.596±0.00 3.138±0.00 2.614±0.51 2.944±0.43
ENST00000545145 1.287±0.00 4.018±0.00 N/A 1.322±0.59 2.445±0.00 N/A 0.661±0.49 2.026±0.00 0.562±0.04 1.837±0.00 N/A 2.171±0.93 0.579±0.00 1.582±0.30
ENST00000546876 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552384 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.149±0.00 21.708±0.00 11.451±0.00 17.155±0.00
ENST00000552386 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553232 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.673±0.00 6.500±0.00 N/A N/A
ENSG00000135094 ENST00000257549 0.302±0.00 N/A 0.042±0.00 3.456±2.78 0.336±0.00 0.074±0.00 0.107±0.06 49.251±49.00 49.300±48.88 2.526±1.88 N/A 1.798±0.93 2.095±1.03 0.045±0.00
ENST00000546639 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000546785 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000547342 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.185±0.00 N/A N/A 0.064±0.00
ENST00000552280 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.097±0.00
ENST00000553112 0.177±0.00 N/A N/A N/A 0.623±0.00 0.275±0.04 N/A 0.355±0.00 N/A N/A 0.059±0.00 0.409±0.00 N/A 0.063±0.00
ENSG00000139410 ENST00000345635 0.711±0.00 1.943±0.00 N/A 1.339±0.00 1.810±1.72 0.485±0.30 1.252±0.00 2.883±2.02 0.094±0.00 N/A 0.645±0.00 0.076±0.00 N/A 1.089±0.05
ENST00000403593 0.829±0.00 0.887±0.00 1.261±0.00 1.179±1.03 2.278±0.00 0.609±0.00 0.229±0.16 7.815±6.64 35.394±0.00 0.900±0.81 0.170±0.00 6.853±1.29 4.532±0.87 3.427±0.26
ENST00000546672 N/A N/A N/A 0.273±0.00 0.614±0.00 N/A 0.159±0.00 3.962±0.00 12.736±0.00 N/A N/A 2.907±0.00 N/A 2.424±0.00
ENST00000547802 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.225±0.00 N/A N/A
ENST00000551760 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553248 N/A N/A N/A N/A N/A 0.458±0.00 N/A N/A 0.939±0.00 N/A N/A 0.574±0.00 N/A N/A
ENSG00000151176 ENST00000280800 29.885±0.00 12.357±0.00 1.715±0.00 10.730±8.61 21.230±18.27 6.546±6.06 4.980±4.40 6.476±4.31 9.003±8.05 7.134±4.97 7.249±5.97 28.984±22.33 10.817±2.15 25.272±11.90
ENST00000545182 N/A N/A N/A N/A 0.996±0.00 N/A 2.860±1.07 N/A 1.755±0.00 N/A 5.867±0.00 3.115±0.00 8.154±0.00 18.207±0.00
ENST00000547163 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000548997 N/A N/A N/A 3.584±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000249550 ENST00000510694 0.095±0.00 0.215±0.00 N/A N/A 0.020±0.00 N/A 0.046±0.00 0.127±0.00 0.043±0.00 0.080±0.00 N/A 0.138±0.13 N/A 0.187±0.00
ENST00000547963 0.019±0.00 0.044±0.00 N/A 0.355±0.04 0.032±0.00 0.029±0.00 0.006±0.00 N/A N/A N/A N/A 0.011±0.00 0.036±0.02 N/A
ENST00000550223 N/A N/A N/A 0.189±0.00 N/A N/A N/A N/A N/A N/A N/A 0.846±0.00 0.052±0.00 N/A
ENST00000550905 0.084±0.00 0.120±0.00 N/A N/A N/A 0.029±0.00 0.081±0.00 N/A N/A 0.141±0.00 0.076±0.00 N/A 0.087±0.00 N/A
ENST00000551982 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000257231 ENST00000549314 N/A 1.030±0.00 N/A 0.057±0.00 N/A N/A 0.105±0.00 N/A N/A N/A 0.358±0.00 N/A N/A N/A
ENSG00000257935 ENST00000551357 N/A N/A N/A 0.035±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029594 ENSMUST00000031590 N/A 1.657±0.00 N/A 4.758±0.00 0.561±0.00 N/A 0.414±0.00 N/A 1.814±0.00 N/A 1.440±0.00 3.477±2.05 4.498±0.00 3.354±1.47
ENSMUSG00000029595 ENSMUST00000031591 0.024±0.01 0.019±0.01 0.009±0.01 5.485±4.28 0.058±0.05 0.013±0.00 0.017±0.00 0.018±0.01 0.022±0.02 0.016±0.01 0.024±0.00 0.071±0.04 0.036±0.02 0.113±0.09
ENSMUSG00000029596 ENSMUST00000031594 7.979±3.13 24.181±9.06 3.515±0.68 1.118±0.92 3.796±1.08 10.303±2.44 3.956±0.69 4.029±0.67 2.575±1.53 0.811±0.32 N/A 13.539±5.65 12.102±1.85 2.749±0.37
ENSMUST00000052258 3.396±0.00 38.455±12.13 0.944±0.00 0.291±0.00 1.311±0.83 4.523±1.83 1.613±0.00 1.429±0.31 3.834±2.31 0.685±0.13 0.086±0.04 5.648±0.86 1.473±1.67 1.206±0.00
ENSMUST00000132916 N/A N/A N/A 2.034±0.00 0.332±0.00 N/A N/A N/A N/A N/A 0.202±0.07 6.483±0.00 0.785±0.00 N/A
ENSMUSG00000029597 ENSMUST00000066540 N/A N/A N/A N/A N/A N/A N/A N/A 109.018±62.13 N/A N/A N/A N/A N/A
ENSMUST00000111898 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000124978 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000029598 ENSMUST00000031597 22.159±4.15 27.200±3.08 8.019±2.70 6.416±3.04 11.789±6.45 12.722±1.68 10.068±2.53 16.791±2.14 14.153±12.08 15.714±0.56 5.018±1.80 20.874±5.66 10.148±4.20 19.458±7.75
ENSMUST00000131831 N/A N/A N/A 1.388±0.43 0.713±0.00 N/A N/A N/A N/A N/A 0.855±0.19 4.080±0.00 N/A N/A
ENSMUST00000151361 N/A 34.947±1.54 4.899±0.00 14.970±0.00 11.218±1.84 4.901±0.27 N/A N/A N/A 8.172±0.81 3.053±0.21 19.976±3.92 16.316±8.02 16.373±2.51
ENSMUSG00000032741 ENSMUST00000046426 15.569±8.10 14.221±1.65 20.964±2.14 6.971±3.01 18.688±2.91 40.944±1.69 9.498±1.37 55.481±1.58 17.237±3.82 16.343±1.47 12.999±2.10 15.126±3.98 33.759±10.96 4.020±1.91
ENSMUSG00000032754 ENSMUST00000068326 10.998±4.71 8.242±2.27 10.585±0.15 0.679±0.03 10.500±3.80 20.110±7.58 2.415±1.11 5.844±1.11 8.432±3.37 9.720±1.46 1.489±0.82 7.454±1.36 7.539±4.02 0.905±0.36
ENSMUST00000076051 6.112±1.22 6.786±2.00 4.533±0.38 0.352±0.06 5.194±1.42 10.561±2.69 2.070±0.39 3.850±0.54 4.124±2.85 4.985±1.13 1.492±0.51 4.642±1.96 7.501±5.30 0.405±0.27
ENSMUST00000111889 N/A N/A N/A 0.891±0.00 3.740±0.00 N/A N/A N/A N/A N/A N/A 2.561±0.00 3.796±0.00 0.510±0.00
ENSMUST00000111890 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.811±0.28 0.711±0.00 2.033±0.00 N/A
ENSMUST00000123326 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140329 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 39.560±17.10 0.512±0.00
ENSMUST00000147496 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000097368 ENSMUST00000180812 N/A N/A N/A 0.624±0.00 0.071±0.00 N/A N/A N/A N/A N/A N/A 1.785±0.00 1.458±0.79 0.715±0.00
ENSMUST00000181905 N/A 0.190±0.00 N/A N/A N/A N/A 0.229±0.00 N/A N/A N/A 0.549±0.09 N/A N/A N/A
ENSMUSG00000098649 ENSMUST00000185026 N/A N/A N/A 7.657±5.57 N/A N/A N/A N/A 0.036±0.00 N/A N/A N/A N/A N/A

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