C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RAB18, member RAS oncogene family
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000099246 RAB18 9606 + 10:27504174-27542237 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000356940 RAB18-001 27504268-27542214 protein_coding
  ENST00000375802 RAB18-003 27504328-27538140 protein_coding
  ENST00000423465 RAB18-005 27504619-27537966 protein_coding
  ENST00000465772 RAB18-004 27504377-27538489 processed_transcript
  ENST00000484281 RAB18-006 27504394-27514217 processed_transcript
  ENST00000490236 RAB18-002 27504299-27510490 retained_intron
  ENST00000535776 RAB18-201 27504174-27542237 protein_coding
  ENST00000611151 RAB18-202 27504174-27542237 protein_coding
  ENST00000621805 RAB18-203 27504370-27542237 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000356940ENST00000375802ENST00000423465ENST00000465772ENST00000621805
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000356940 N/A N/A N/A 5.668±3.20 1.360±0.00 3.140±0.00 2.015±0.00 3.259±0.00 3.829±0.00 2.583±0.61 0.651±0.00 6.689±1.55 3.215±2.57 5.004±0.00
ENST00000375802 14.038±0.00 9.605±0.00 N/A N/A 24.817±0.00 22.747±0.00 N/A N/A N/A N/A 3.931±1.90 9.969±0.00 9.175±0.51 12.537±0.00
ENST00000423465 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.341±0.00
ENST00000465772 N/A N/A 8.555±0.00 16.298±0.13 7.330±0.00 7.401±0.00 11.843±5.17 13.141±2.63 13.023±0.00 9.037±0.00 1.746±0.00 10.162±1.02 9.788±0.00 9.851±0.00
ENST00000621805 1.572±0.00 1.056±0.00 N/A 2.154±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.658±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00077Z CIL_00077Z_0002 CGP 10:27504174-27746060

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001654 ISS eye development
GO:0003924 NAS:IEA GTPase activity
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005622 IDA:IEA intracellular
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005886 IEA plasma membrane
GO:0006184 NAS:IEA GTP catabolic process
GO:0006886 IEA intracellular protein transport
GO:0006913 IEA nucleocytoplasmic transport
GO:0007165 IEA signal transduction
GO:0007264 NAS:IEA small GTPase mediated signal transduction
GO:0007420 ISS brain development
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0019003 IDA GDP binding
GO:0034389 IMP lipid particle organization
GO:0070062 IDA extracellular vesicular exosome
GO:0071782 IDA endoplasmic reticulum tubular network
GO:0071786 IMP endoplasmic reticulum tubular network organization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000055291 rab18a RAB18A, member RAS oncogene family protein_coding Danio_rerio
ENSMUSG00000073639 Rab18 RAB18, member RAS oncogene family protein_coding Mus_musculus

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