C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000099624 ATP5D 9606 + 19:1241746-1244826 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000215375 ATP5D-001 1241750-1244826 protein_coding
  ENST00000395633 ATP5D-008 1241746-1244825 protein_coding
  ENST00000588538 ATP5D-003 1241817-1244825 retained_intron
  ENST00000589478 ATP5D-005 1244057-1244825 retained_intron
  ENST00000590265 ATP5D-002 1241770-1244825 retained_intron
  ENST00000591249 ATP5D-009 1242505-1244825 protein_coding
  ENST00000591660 ATP5D-006 1241820-1244786 protein_coding
  ENST00000592624 ATP5D-004 1241768-1243354 retained_intron
  ENST00000614837 ATP5D-007 1244058-1244825 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000215375ENST00000395633ENST00000589478ENST00000591249ENST00000591660ENST00000614837
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000215375 40.404±0.00 40.701±0.00 N/A 22.467±0.00 28.124±27.81 32.498±31.45 59.466±0.00 52.997±0.00 21.184±0.00 35.496±0.00 66.163±0.00 31.226±4.15 38.413±4.05 32.036±0.00
ENST00000395633 N/A N/A 1.619±0.00 14.210±4.46 1.587±0.00 2.507±0.00 64.177±59.60 27.862±23.48 55.718±53.49 56.329±0.00 83.418±54.05 26.303±6.95 64.327±27.25 12.903±0.00
ENST00000589478 N/A N/A N/A 4.449±0.00 N/A 20.400±0.00 N/A 1.947±0.00 N/A 0.511±0.00 8.559±0.00 54.248±0.00 N/A 23.692±0.00
ENST00000591249 N/A N/A N/A N/A 22.042±0.00 N/A N/A N/A N/A N/A 17.071±0.00 N/A N/A N/A
ENST00000591660 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 48.520±0.00 42.293±0.00 32.679±0.00
ENST00000614837 39.042±0.00 59.891±0.00 1.861±0.00 28.821±19.31 27.899±26.01 31.300±21.25 N/A 33.604±14.89 2.599±0.00 2.296±0.00 37.506±0.00 26.633±17.31 30.205±6.10 21.086±3.85

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000QV CIL_0000QV_0001 CGP 19:1228287-1244826
CIL_0000QQ CIL_0000QQ_0001 CGP 19:1241746-1259140

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000275 NAS mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)
GO:0005215 NAS transporter activity
GO:0005524 NAS ATP binding
GO:0005739 NAS mitochondrion
GO:0005743 ISS mitochondrial inner membrane
GO:0005753 IDA mitochondrial proton-transporting ATP synthase complex
GO:0005759 TAS mitochondrial matrix
GO:0006119 NAS oxidative phosphorylation
GO:0006200 NAS ATP catabolic process
GO:0006754 NAS ATP biosynthetic process
GO:0015986 IEA ATP synthesis coupled proton transport
GO:0016887 IDA ATPase activity
GO:0022857 IC transmembrane transporter activity
GO:0022904 TAS respiratory electron transport chain
GO:0042776 IC mitochondrial ATP synthesis coupled proton transport
GO:0043531 NAS ADP binding
GO:0044237 TAS cellular metabolic process
GO:0044281 TAS small molecule metabolic process
GO:0045261 IEA proton-transporting ATP synthase complex, catalytic core F(1)
GO:0046688 NAS response to copper ion
GO:0046933 IEA proton-transporting ATP synthase activity, rotational mechanism
GO:0046961 IEA proton-transporting ATPase activity, rotational mechanism

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000019404 atp5d ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit protein_coding Danio_rerio
ENSMUSG00000003072 Atp5d ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit protein_coding Mus_musculus

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