C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: paralemmin
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000099864 PALM 9606 + 19:709093-748330 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000264560 PALM-002 709093-748329 protein_coding
  ENST00000338448 PALM-001 709101-748330 protein_coding
  ENST00000586055 PALM-008 719100-726173 protein_coding
  ENST00000586776 PALM-007 722504-727088 processed_transcript
  ENST00000587513 PALM-005 735055-748325 processed_transcript
  ENST00000589012 PALM-009 709131-736139 retained_intron
  ENST00000590161 PALM-006 735033-748329 protein_coding
  ENST00000592155 PALM-004 735030-748329 protein_coding
  ENST00000592870 PALM-011 709097-735048 retained_intron
  ENST00000593172 PALM-003 727786-748329 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000264560ENST00000338448ENST00000587513ENST00000589012ENST00000590161ENST00000592155ENST00000592870ENST00000593172
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000264560 16.394±0.00 N/A N/A 28.580±23.76 21.854±0.00 N/A 4.671±0.00 N/A 2.907±0.00 6.891±0.00 2.324±0.00 N/A N/A 11.632±0.00
ENST00000338448 39.665±0.00 24.781±0.00 1.356±0.00 13.103±6.39 33.813±32.84 17.995±16.78 1.281±0.70 11.831±0.00 2.139±0.00 9.004±7.98 0.426±0.00 39.453±41.17 30.132±11.82 11.724±5.74
ENST00000587513 N/A 11.730±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589012 N/A N/A N/A N/A 2.815±0.00 N/A N/A N/A 4.381±0.00 1.427±0.00 N/A 5.849±0.00 9.232±0.00 5.195±0.00
ENST00000590161 N/A N/A N/A N/A N/A 0.289±0.00 N/A 8.510±0.00 N/A 4.350±0.00 N/A 10.825±0.00 N/A 6.852±0.00
ENST00000592155 N/A N/A 1.099±0.00 N/A N/A N/A 2.114±0.00 N/A N/A N/A 0.639±0.00 N/A N/A N/A
ENST00000592870 N/A N/A 0.801±0.00 N/A N/A N/A N/A N/A N/A N/A 0.306±0.00 N/A N/A N/A
ENST00000593172 N/A N/A N/A N/A N/A N/A N/A 0.463±0.00 N/A N/A N/A N/A 5.591±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008XG CIL_0008XG_0001 VISTA 19:477571-1083531
CIL_0001F5 CIL_0001F5_0001 CGP 19:685546-748330
CIL_00008D CIL_00008D_0001 CGP 19:709093-764319

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0005886 IDA plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0006928 TAS cellular component movement
GO:0007010 IEA cytoskeleton organization
GO:0007194 IDA negative regulation of adenylate cyclase activity
GO:0008104 IEA protein localization
GO:0008360 IEA regulation of cell shape
GO:0016020 IEA membrane
GO:0016023 TAS cytoplasmic membrane-bounded vesicle
GO:0016323 IEA basolateral plasma membrane
GO:0016327 IEA apicolateral plasma membrane
GO:0030175 IEA filopodium
GO:0030424 IEA axon
GO:0030818 IEA negative regulation of cAMP biosynthetic process
GO:0031527 IDA filopodium membrane
GO:0031750 IEA D3 dopamine receptor binding
GO:0032590 IEA dendrite membrane
GO:0032591 IEA dendritic spine membrane
GO:0044309 IEA neuron spine
GO:0051491 IDA positive regulation of filopodium assembly
GO:0060074 IEA synapse maturation
GO:0060160 IDA negative regulation of dopamine receptor signaling pathway
GO:0060999 IEA positive regulation of dendritic spine development
GO:0071257 IEA cellular response to electrical stimulus
GO:0072661 IEA protein targeting to plasma membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000007818 palm1b paralemmin 1b protein_coding Danio_rerio
ENSDARG00000026882 palm1a paralemmin 1a protein_coding Danio_rerio
ENSMUSG00000035863 Palm paralemmin protein_coding Mus_musculus

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