C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: eukaryotic translation initiation factor 3, subunit L
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000100129 EIF3L 9606 + 22:37848868-37889407 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000381683 EIF3L-013 37849417-37888479 protein_coding
  ENST00000406934 EIF3L-002 37849481-37888630 protein_coding
  ENST00000412331 EIF3L-001 37848868-37889407 protein_coding
  ENST00000414316 EIF3L-007 37849420-37863033 protein_coding
  ENST00000436452 EIF3L-008 37849420-37870189 nonsense_mediated_decay
  ENST00000439997 EIF3L-005 37849411-37870273 nonsense_mediated_decay
  ENST00000450376 EIF3L-011 37878061-37888631 protein_coding
  ENST00000451427 EIF3L-006 37849620-37863288 protein_coding
  ENST00000460638 EIF3L-012 37886704-37888631 retained_intron
  ENST00000464790 EIF3L-009 37858565-37871290 processed_transcript
  ENST00000476955 EIF3L-010 37849417-37871284 processed_transcript
  ENST00000477256 EIF3L-004 37849421-37886868 retained_intron
  ENST00000482600 EIF3L-003 37870165-37888631 retained_intron
  ENST00000624234 EIF3L-201 37849372-37888782 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000381683ENST00000460638ENST00000477256ENST00000482600ENST00000624234
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000381683 N/A N/A 2.910±0.00 N/A 10.457±0.00 N/A 3.431±0.00 N/A N/A N/A 4.632±0.00 10.300±0.00 N/A N/A
ENST00000460638 136.541±0.00 147.854±0.00 N/A 89.216±0.00 121.284±0.00 228.487±0.00 94.297±0.00 139.576±0.00 47.518±0.00 117.034±0.00 N/A 578.696±308.82 269.389±0.00 195.094±18.46
ENST00000477256 115.368±0.00 78.222±0.00 N/A 53.922±0.00 86.940±0.00 139.136±0.00 31.748±28.79 68.493±0.00 24.915±0.00 74.387±0.00 107.948±0.00 50.527±30.36 39.538±9.96 117.618±0.00
ENST00000482600 N/A 45.529±0.00 N/A 10.565±0.00 26.039±0.00 N/A N/A 11.178±0.00 20.221±3.58 32.289±22.09 30.362±23.44 209.501±22.59 139.977±46.05 130.947±0.00
ENST00000624234 N/A N/A 8.034±0.00 16.944±0.00 16.434±0.00 24.926±0.00 8.573±0.00 22.653±0.00 24.167±0.00 17.531±0.00 18.401±0.00 84.147±46.35 69.764±11.45 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099H CIL_00099H_0001 VISTA 22:37683926-38284300
CIL_0008KJ CIL_0008KJ_0001 VISTA 22:37685616-38286450
CIL_0008BX CIL_0008BX_0001 VISTA 22:37696030-38296592
CIL_0008KA CIL_0008KA_0001 VISTA 22:37698338-38299192
CIL_00082J CIL_00082J_0001 VISTA 22:37733233-38334508
CIL_0008C1 CIL_0008C1_0001 VISTA 22:37746133-38346872
CIL_00082K CIL_00082K_0001 VISTA 22:37750385-38350990
CIL_0003QH CIL_0003QH_0001 CGP 22:37830855-37889407
CIL_0003QI CIL_0003QI_0001 CGP 22:37848868-37942822

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001650 IEA fibrillar center
GO:0001731 IEA formation of translation preinitiation complex
GO:0003743 IC:IEA translation initiation factor activity
GO:0005515 IPI protein binding
GO:0005654 IEA nucleoplasm
GO:0005730 IEA nucleolus
GO:0005737 IEA cytoplasm
GO:0005852 IDA:IEA eukaryotic translation initiation factor 3 complex
GO:0006413 IC translational initiation
GO:0006446 IEA regulation of translational initiation
GO:0016020 IDA membrane
GO:0016282 IEA eukaryotic 43S preinitiation complex
GO:0033290 IEA eukaryotic 48S preinitiation complex
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000006729 eif3s6ip eukaryotic translation initiation factor 3, subunit 6 interacting protein protein_coding Danio_rerio
ENSMUSG00000033047 Eif3l eukaryotic translation initiation factor 3, subunit L protein_coding Mus_musculus

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