C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: PHD finger protein 5A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000100410 PHF5A 9606 - 22:41459717-41468725 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000216252 PHF5A-001 41459717-41468725 protein_coding
  ENST00000459687 PHF5A-002 41460303-41468625 retained_intron
  ENST00000491254 PHF5A-003 41460432-41468499 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000216252ENST00000459687ENST00000491254
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000216252 8.690±0.00 12.444±0.00 2.176±0.00 6.749±0.22 5.764±0.63 7.812±3.56 3.704±2.18 3.930±1.47 7.102±1.31 9.064±4.26 6.656±3.83 25.663±20.87 26.861±11.25 21.874±8.48
ENST00000459687 N/A N/A N/A N/A N/A 1.388±0.00 N/A 1.159±0.00 2.477±0.00 N/A N/A N/A N/A N/A
ENST00000491254 N/A N/A N/A 4.481±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00065P CIL_00065P_0001 CGP 22:41459717-41528989

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000398 IDA mRNA splicing, via spliceosome
GO:0003677 IEA DNA binding
GO:0003700 ISS sequence-specific DNA binding transcription factor activity
GO:0005515 IEA protein binding
GO:0005654 TAS nucleoplasm
GO:0005686 IDA U2 snRNP
GO:0005689 IDA U12-type spliceosomal complex
GO:0006351 IEA transcription, DNA-templated
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0016363 IEA nuclear matrix
GO:0016607 ISS nuclear speck
GO:0044822 IDA poly(A) RNA binding
GO:0045893 ISS positive regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000045155 phf5a PHD finger protein 5A protein_coding Danio_rerio
ENSMUSG00000061360 Phf5a PHD finger protein 5A protein_coding Mus_musculus

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