C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PHD finger protein 5A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000216252 PHF5A-001 ENSG00000100410 9606 - 22:41459717-41468725 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000216252
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000216252 8.690±0.00 12.444±0.00 2.176±0.00 6.749±0.22 5.764±0.63 7.812±3.56 3.704±2.18 3.930±1.47 7.102±1.31 9.064±4.26 6.656±3.83 25.663±20.87 26.861±11.25 21.874±8.48

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00065P CIL_00065P_0001 CGP 22:41459717-41528989

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000398 IDA mRNA splicing, via spliceosome
GO:0003677 IEA DNA binding
GO:0003700 ISS sequence-specific DNA binding transcription factor activity
GO:0005515 IEA protein binding
GO:0005654 TAS nucleoplasm
GO:0005686 IDA U2 snRNP
GO:0005689 IDA U12-type spliceosomal complex
GO:0006351 IEA transcription, DNA-templated
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0016363 IEA nuclear matrix
GO:0016607 ISS nuclear speck
GO:0044822 IDA poly(A) RNA binding
GO:0045893 ISS positive regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000023117 Phf5a-001 protein_coding Mus_musculus 0 568
ENSMUST00000160415 Phf5a-002 processed_transcript Mus_musculus 0 464
ENSDART00000066397 phf5a-001 protein_coding Danio_rerio 0 339
ENSMUST00000120602 Gm15120-001 processed_pseudogene Mus_musculus 0 248
ENSDART00000144771 phf5a-003 retained_intron Danio_rerio 0 189

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