C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: short chain dehydrogenase/reductase family 39U, member 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000100445 SDR39U1 9606 - 14:24439766-24442905 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000399390 SDR39U1-201 24439768-24442776 protein_coding
  ENST00000399395 SDR39U1-001 24439766-24442803 protein_coding
  ENST00000538105 SDR39U1-008 24439782-24442448 protein_coding
  ENST00000544691 SDR39U1-003 24439766-24442776 retained_intron
  ENST00000553343 SDR39U1-015 24440138-24442375 protein_coding
  ENST00000553546 SDR39U1-020 24440039-24440976 retained_intron
  ENST00000553930 SDR39U1-002 24439779-24442858 protein_coding
  ENST00000553937 SDR39U1-011 24442324-24442905 retained_intron
  ENST00000554698 SDR39U1-007 24439785-24442694 protein_coding
  ENST00000554947 SDR39U1-012 24440138-24442759 retained_intron
  ENST00000555225 SDR39U1-021 24440177-24442453 protein_coding
  ENST00000555355 SDR39U1-009 24440204-24442266 protein_coding
  ENST00000555365 SDR39U1-018 24439902-24442765 protein_coding
  ENST00000555561 SDR39U1-019 24440101-24440926 processed_transcript
  ENST00000555778 SDR39U1-016 24441292-24442281 retained_intron
  ENST00000555830 SDR39U1-010 24440786-24442904 processed_transcript
  ENST00000556175 SDR39U1-013 24440854-24442677 retained_intron
  ENST00000556249 SDR39U1-017 24440177-24442441 protein_coding
  ENST00000556262 SDR39U1-005 24439780-24442776 retained_intron
  ENST00000556523 SDR39U1-022 24440264-24442437 protein_coding
  ENST00000556548 SDR39U1-004 24439768-24442776 retained_intron
  ENST00000556707 SDR39U1-006 24439797-24442453 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000399395ENST00000538105ENST00000556262ENST00000556548
Transcript ID Adrenal Bladder Brain Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000399395 N/A N/A 16.580±0.00 N/A 19.773±0.00 N/A N/A N/A 17.725±0.00 N/A N/A 14.808±0.13
ENST00000538105 N/A N/A N/A 18.451±0.00 N/A N/A N/A N/A N/A 75.218±0.00 98.737±0.00 15.883±0.00
ENST00000556262 N/A 1.437±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556548 13.781±0.00 N/A N/A N/A N/A 5.470±0.00 2.846±0.00 7.164±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004O8 CIL_0004O8_0001 CGP 14:24426532-24441834
CIL_0004OB CIL_0004OB_0001 CGP 14:24429286-24442905
CIL_0004OA CIL_0004OA_0001 CGP 14:24439766-24508265

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003824 IEA catalytic activity
GO:0005634 IDA nucleus
GO:0016491 IEA oxidoreductase activity
GO:0050662 IEA coenzyme binding
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000068215 sdr39u1 short chain dehydrogenase/reductase family 39U, member 1 protein_coding Danio_rerio
ENSMUSG00000022223 Sdr39u1 short chain dehydrogenase/reductase family 39U, member 1 protein_coding Mus_musculus

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