C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: valosin containing protein lysine (K) methyltransferase
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000100483 VCPKMT 9606 - 14:50108632-50116600 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000395859 VCPKMT-004 50109537-50116600 protein_coding
  ENST00000395860 VCPKMT-002 50108633-50116557 protein_coding
  ENST00000484763 VCPKMT-003 50108642-50116558 retained_intron
  ENST00000491402 VCPKMT-001 50108633-50116600 nonsense_mediated_decay
  ENST00000569518 VCPKMT-005 50108632-50116477 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000395859ENST00000395860ENST00000484763ENST00000491402ENST00000569518
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000395859 N/A N/A N/A N/A N/A N/A N/A N/A 0.600±0.00 N/A 0.866±0.63 N/A N/A 0.766±0.00
ENST00000395860 N/A N/A 0.243±0.00 1.649±0.00 N/A N/A N/A 0.447±0.00 0.537±0.00 N/A N/A 0.634±0.00 0.393±0.19 1.273±0.00
ENST00000484763 0.828±0.00 1.159±0.00 N/A N/A 1.238±0.00 N/A N/A 0.540±0.00 N/A N/A N/A 0.472±0.00 N/A N/A
ENST00000491402 0.259±0.00 2.902±0.00 N/A 1.638±0.88 1.240±0.00 0.621±0.24 0.467±0.00 1.625±0.00 0.649±0.00 1.106±0.00 N/A 0.935±0.18 0.303±0.06 1.908±0.00
ENST00000569518 N/A 0.825±0.00 N/A N/A N/A N/A N/A 0.910±0.00 N/A N/A N/A N/A 0.208±0.12 0.767±0.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00016A CIL_00016A_0001 CGP 14:50108632-50231558

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005575 ND cellular_component
GO:0005737 IEA cytoplasm
GO:0016279 IDA protein-lysine N-methyltransferase activity
GO:0018023 IDA peptidyl-lysine trimethylation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000060021 vcpkmt valosin containing protein lysine (K) methyltransferase protein_coding Danio_rerio
ENSMUSG00000049882 Vcpkmt valosin containing protein lysine (K) methyltransferase protein_coding Mus_musculus

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