C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: T-cell leukemia/lymphoma 1A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000100721 TCL1A 9606 - 14:95709967-95714196 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000402399 TCL1A-201 95709968-95714196 protein_coding
  ENST00000553467 TCL1A-008 95710723-95711962 retained_intron
  ENST00000554012 TCL1A-001 95709967-95714196 protein_coding
  ENST00000554119 TCL1A-006 95710667-95714089 nonsense_mediated_decay
  ENST00000555202 TCL1A-002 95711447-95714130 protein_coding
  ENST00000555886 TCL1A-003 95710705-95714127 nonsense_mediated_decay
  ENST00000556156 TCL1A-004 95710767-95714104 nonsense_mediated_decay
  ENST00000556450 TCL1A-005 95710056-95714098 protein_coding
  ENST00000557043 TCL1A-007 95710176-95712722 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000554012ENST00000554119ENST00000555202ENST00000555886ENST00000556156ENST00000556450ENST00000557043
Transcript ID Adipose Adrenal Brain Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000554012 N/A 2.914±0.00 N/A N/A N/A N/A N/A N/A N/A 0.487±0.00 2.238±0.49
ENST00000554119 N/A N/A N/A N/A 0.501±0.00 N/A N/A N/A N/A N/A N/A
ENST00000555202 N/A N/A N/A N/A N/A 0.580±0.00 N/A N/A 0.082±0.00 N/A N/A
ENST00000555886 0.193±0.00 N/A 0.208±0.00 0.086±0.00 0.055±0.00 0.214±0.00 N/A 0.127±0.00 N/A 0.404±0.00 N/A
ENST00000556156 N/A N/A N/A N/A N/A N/A 0.563±0.00 N/A N/A 0.176±0.00 N/A
ENST00000556450 N/A N/A N/A 0.344±0.00 N/A N/A 0.930±0.00 N/A N/A 0.175±0.00 N/A
ENST00000557043 N/A 11.619±0.00 N/A N/A N/A N/A 0.360±0.00 N/A N/A 0.227±0.00 2.962±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099M CIL_00099M_0001 VISTA 14:95131820-95732594
CIL_0008Z4 CIL_0008Z4_0001 VISTA 14:95131888-95732401
CIL_0007GT CIL_0007GT_0001 CGP 14:95686417-95714196

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005783 IEA endoplasmic reticulum
GO:0005938 IEA cell cortex
GO:0007275 TAS multicellular organismal development
GO:0019827 IEA stem cell maintenance
GO:0045120 IEA pronucleus

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000041359 Tcl1 T cell lymphoma breakpoint 1 protein_coding Mus_musculus

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