C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: T cell lymphoma breakpoint 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000041359 Tcl1 10090 - 12:105216750-105222793 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000041316 Tcl1-001 105216750-105222737 protein_coding
  ENSMUST00000101071 Tcl1-002 105216758-105222716 protein_coding
  ENSMUST00000175652 Tcl1-003 105217498-105222793 protein_coding
  ENSMUST00000176579 Tcl1-004 105217308-105222706 protein_coding
  ENSMUST00000176952 Tcl1-006 105218290-105222625 processed_transcript
  ENSMUST00000177521 Tcl1-005 105217594-105222696 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartOvaryPlacentaTestisENSMUST00000041316ENSMUST00000101071ENSMUST00000175652ENSMUST00000176579ENSMUST00000176952
Transcript ID Heart Ovary Placenta Testis
ENSMUST00000041316 N/A 10.830±3.20 0.030±0.01 0.281±0.09
ENSMUST00000101071 0.019±0.00 2.746±1.09 N/A 0.123±0.06
ENSMUST00000175652 N/A N/A N/A 0.285±0.08
ENSMUST00000176579 N/A N/A 0.008±0.00 N/A
ENSMUST00000176952 N/A N/A N/A 0.161±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099M CIL_00099M_0002 VISTA 12:104639330-105240069
CIL_0008Z4 CIL_0008Z4_0002 VISTA 12:104639392-105239908
CIL_0007GT CIL_0007GT_0002 CGP 12:105202422-105222793

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005783 IEA endoplasmic reticulum
GO:0005938 IDA cell cortex
GO:0019827 IMP stem cell maintenance
GO:0045120 IDA pronucleus

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000100721 TCL1A T-cell leukemia/lymphoma 1A protein_coding Homo_sapiens

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