C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: emerin
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000102119 EMD 9606 + X:154379197-154381523 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000369835 EMD-010 154379273-154381291 protein_coding
  ENST00000369842 EMD-001 154379197-154381523 protein_coding
  ENST00000428228 EMD-007 154379361-154381283 nonsense_mediated_decay
  ENST00000468294 EMD-008 154379525-154380894 retained_intron
  ENST00000471965 EMD-004 154380565-154381443 retained_intron
  ENST00000485261 EMD-006 154379404-154380955 retained_intron
  ENST00000486738 EMD-003 154379341-154381279 retained_intron
  ENST00000492448 EMD-009 154379625-154381281 processed_transcript
  ENST00000494443 EMD-005 154379428-154380462 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000369835ENST00000369842ENST00000428228ENST00000468294ENST00000486738ENST00000492448ENST00000494443
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000369835 17.598±0.00 12.371±0.00 N/A 7.564±0.00 10.839±0.00 16.466±0.00 N/A 14.340±0.00 N/A N/A N/A 9.319±6.34 N/A 11.306±0.18
ENST00000369842 9.059±0.00 7.578±0.00 N/A 7.210±5.80 4.239±3.22 7.871±6.44 11.134±9.23 31.192±0.00 22.041±0.00 33.307±32.76 42.755±42.08 27.946±18.55 19.995±8.77 12.973±3.91
ENST00000428228 9.436±0.00 9.802±0.00 N/A 3.463±1.59 5.441±3.95 3.458±0.00 N/A N/A N/A N/A N/A 22.572±0.00 N/A 6.197±0.00
ENST00000468294 N/A N/A 1.192±0.00 N/A N/A N/A N/A N/A N/A N/A 7.828±0.00 N/A N/A N/A
ENST00000486738 N/A N/A N/A N/A N/A 1.064±0.00 N/A N/A N/A N/A N/A 22.766±0.00 N/A N/A
ENST00000492448 N/A 10.672±0.00 2.762±0.00 N/A N/A 10.415±0.00 N/A 1.053±0.00 N/A N/A N/A 26.434±18.09 22.159±1.52 14.380±0.00
ENST00000494443 N/A N/A 1.558±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 1.093±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001L9 CIL_0001L9_0001 CGP X:154348524-154381523

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000278 TAS mitotic cell cycle
GO:0003779 IDA actin binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005635 IDA nuclear envelope
GO:0005637 NAS nuclear inner membrane
GO:0005640 IDA nuclear outer membrane
GO:0005783 IDA endoplasmic reticulum
GO:0005874 IEA microtubule
GO:0006936 TAS muscle contraction
GO:0007077 TAS mitotic nuclear envelope disassembly
GO:0007084 TAS mitotic nuclear envelope reassembly
GO:0007517 TAS muscle organ development
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0031965 IDA nuclear membrane
GO:0035414 IMP negative regulation of catenin import into nucleus
GO:0035914 IEA skeletal muscle cell differentiation
GO:0046827 IMP positive regulation of protein export from nucleus
GO:0048147 IMP negative regulation of fibroblast proliferation
GO:0048487 IDA beta-tubulin binding
GO:0060828 IMP regulation of canonical Wnt signaling pathway
GO:0071363 IMP cellular response to growth factor stimulus

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000001964 Emd emerin protein_coding Mus_musculus

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