C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: emerin
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000001964 Emd 10090 + X:74254687-74261548 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000002029 Emd-001 74254687-74257887 protein_coding
  ENSMUST00000088313 Emd-002 74254830-74261548 protein_coding
  ENSMUST00000096424 Emd-005 74254752-74257361 protein_coding
  ENSMUST00000119197 Emd-004 74254810-74261005 protein_coding
  ENSMUST00000129516 Emd-003 74254761-74255685 processed_transcript
  ENSMUST00000152288 Emd-006 74254816-74257323 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000002029ENSMUST00000088313ENSMUST00000096424ENSMUST00000119197ENSMUST00000129516ENSMUST00000152288
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000002029 24.738±5.76 15.514±1.73 39.640±3.20 18.066±12.68 22.891±1.71 17.535±1.71 16.804±1.95 15.420±1.95 15.361±7.67 27.256±5.26 13.173±1.43 32.184±13.30 26.406±7.16 14.437±0.83
ENSMUST00000088313 N/A 5.059±0.00 N/A N/A N/A 5.330±0.00 N/A N/A 2.282±0.00 N/A N/A N/A N/A N/A
ENSMUST00000096424 N/A 13.725±1.52 N/A 1.690±0.00 16.077±0.00 9.837±0.94 4.959±0.45 5.875±0.09 6.031±1.33 9.177±0.00 N/A 12.334±4.34 N/A N/A
ENSMUST00000119197 N/A N/A N/A N/A N/A 9.197±2.62 N/A N/A N/A N/A N/A 5.004±0.00 29.066±0.00 2.257±0.00
ENSMUST00000129516 N/A 17.915±2.71 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152288 N/A N/A N/A 9.878±0.00 N/A N/A N/A N/A 13.233±7.86 N/A 4.111±0.46 15.190±1.83 26.911±9.51 2.512±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001L9 CIL_0001L9_0002 CGP X:74223461-74261548

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005635 IDA nuclear envelope
GO:0005637 TAS nuclear inner membrane
GO:0005640 IEA nuclear outer membrane
GO:0005652 TAS nuclear lamina
GO:0005783 IEA endoplasmic reticulum
GO:0005874 IEA microtubule
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0031965 IEA nuclear membrane
GO:0035414 IEA negative regulation of catenin import into nucleus
GO:0035914 IGI skeletal muscle cell differentiation
GO:0046827 IEA positive regulation of protein export from nucleus
GO:0048147 IEA negative regulation of fibroblast proliferation
GO:0048487 IEA beta-tubulin binding
GO:0060828 IEA regulation of canonical Wnt signaling pathway
GO:0071363 IEA cellular response to growth factor stimulus

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000102119 EMD emerin protein_coding Homo_sapiens

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