C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 7 (amino acid transporter light chain, y+L system), member 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000103064 SLC7A6 9606 + 16:68264516-68301823 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000219343 SLC7A6-001 68264530-68301819 protein_coding
  ENST00000379152 SLC7A6-004 68264548-68301819 nonsense_mediated_decay
  ENST00000562727 SLC7A6-005 68265516-68274798 protein_coding
  ENST00000562863 SLC7A6-013 68291286-68294747 retained_intron
  ENST00000563080 SLC7A6-002 68266591-68291658 nonsense_mediated_decay
  ENST00000563146 SLC7A6-014 68266602-68275001 protein_coding
  ENST00000563208 SLC7A6-011 68290962-68294801 retained_intron
  ENST00000564708 SLC7A6-009 68264582-68274948 protein_coding
  ENST00000566454 SLC7A6-003 68264560-68301819 protein_coding
  ENST00000566579 SLC7A6-010 68274869-68291578 nonsense_mediated_decay
  ENST00000566834 SLC7A6-007 68264550-68287343 protein_coding
  ENST00000567325 SLC7A6-015 68294678-68297433 retained_intron
  ENST00000567346 SLC7A6-012 68287760-68294907 nonsense_mediated_decay
  ENST00000568024 SLC7A6-006 68272979-68275095 protein_coding
  ENST00000568088 SLC7A6-008 68264569-68274811 protein_coding
  ENST00000618043 SLC7A6-201 68264516-68301823 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastHeartLiverMuscleOvaryPlacentaTestisENST00000219343ENST00000566454ENST00000618043
Transcript ID Brain Breast Heart Liver Muscle Ovary Placenta Testis
ENST00000219343 N/A 2.048±0.00 1.586±0.85 0.144±0.00 N/A 0.746±0.00 2.676±0.00 N/A
ENST00000566454 0.463±0.00 N/A N/A 0.757±0.00 3.066±0.00 1.184±0.00 N/A 1.178±0.00
ENST00000618043 0.802±0.00 1.814±0.00 N/A N/A 1.448±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000FI CIL_0000FI_0001 CGP 16:68245304-68301823
CIL_00055A CIL_00055A_0001 CGP 16:68264516-68310951

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003333 IEA amino acid transmembrane transport
GO:0005886 TAS plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0006461 TAS protein complex assembly
GO:0006520 TAS cellular amino acid metabolic process
GO:0006810 TAS:IEA transport
GO:0006811 TAS ion transport
GO:0006865 TAS amino acid transport
GO:0007596 TAS blood coagulation
GO:0015171 IEA amino acid transmembrane transporter activity
GO:0015297 IEA antiporter activity
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0050900 TAS leukocyte migration
GO:0055085 TAS:IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000054423 slc7a6 solute carrier family 7 (cationic amino acid transporter, y+ system), member 6 protein_coding Danio_rerio
ENSMUSG00000031904 Slc7a6 solute carrier family 7 (cationic amino acid transporter, y+ system), member 6 protein_coding Mus_musculus

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