C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: secretogranin III
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000104112 SCG3 9606 + 15:51681353-51721031 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000220478 SCG3-001 51681353-51721031 protein_coding
  ENST00000542355 SCG3-002 51681492-51720071 protein_coding
  ENST00000558709 SCG3-003 51681532-51692336 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000220478ENST00000542355ENST00000558709
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000220478 0.021±0.00 28.549±6.34 0.202±0.00 0.728±0.60 0.028±0.00 N/A 0.030±0.01 N/A 0.016±0.00 0.023±0.01 0.045±0.01 0.936±0.54
ENST00000542355 N/A N/A N/A 0.254±0.06 N/A 0.013±0.00 0.094±0.00 0.040±0.00 N/A 0.058±0.03 0.026±0.01 0.845±0.00
ENST00000558709 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.036±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007YR CIL_0007YR_0001 VISTA 15:51100773-51703779

Gene Ontology
GO IDEvidence TypeGO Description
GO:0002576 TAS platelet degranulation
GO:0005576 TAS extracellular region
GO:0007596 TAS blood coagulation
GO:0016020 IEA membrane
GO:0030168 TAS platelet activation
GO:0034774 TAS secretory granule lumen
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000086288 scg3 secretogranin III protein_coding Danio_rerio
ENSMUSG00000032181 Scg3 secretogranin III protein_coding Mus_musculus

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