C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: gasdermin D
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000104518 GSDMD 9606 + 8:143553207-143563062 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000262580 GSDMD-001 143558307-143563062 protein_coding
  ENST00000524846 GSDMD-004 143558689-143563059 retained_intron
  ENST00000525208 GSDMD-010 143562050-143563062 non_stop_decay
  ENST00000525721 GSDMD-017 143558354-143559902 protein_coding
  ENST00000526051 GSDMD-013 143560861-143561878 retained_intron
  ENST00000526406 GSDMD-002 143553207-143563062 protein_coding
  ENST00000526469 GSDMD-008 143560628-143563032 retained_intron
  ENST00000528475 GSDMD-007 143560040-143563059 retained_intron
  ENST00000529854 GSDMD-009 143553707-143559479 protein_coding
  ENST00000531173 GSDMD-012 143561730-143563027 retained_intron
  ENST00000531184 GSDMD-005 143558338-143563055 retained_intron
  ENST00000533063 GSDMD-003 143557913-143563062 protein_coding
  ENST00000533348 GSDMD-014 143557886-143560686 protein_coding
  ENST00000533888 GSDMD-016 143558558-143560653 protein_coding
  ENST00000534018 GSDMD-015 143558371-143561788 protein_coding
  ENST00000534602 GSDMD-011 143561358-143562362 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000262580ENST00000524846ENST00000525208ENST00000525721ENST00000526051ENST00000526469ENST00000528475ENST00000531184ENST00000533063ENST00000534018
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000262580 28.814±0.00 69.304±0.00 N/A 0.466±0.00 11.985±0.00 10.033±0.00 1.651±1.31 22.622±0.00 9.714±9.11 25.486±0.00 4.761±0.00 21.286±10.82 41.996±11.05 5.318±2.98
ENST00000524846 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.175±0.00 N/A N/A
ENST00000525208 N/A 71.922±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000525721 N/A N/A N/A N/A N/A N/A 1.080±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000526051 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.150±0.00 N/A N/A N/A
ENST00000526469 N/A N/A N/A N/A N/A N/A 1.962±0.00 12.969±0.00 N/A 18.953±0.00 N/A N/A N/A N/A
ENST00000528475 N/A N/A 0.509±0.00 0.164±0.00 0.843±0.00 N/A N/A N/A N/A N/A 0.323±0.00 8.434±0.67 N/A 2.365±0.00
ENST00000531184 N/A N/A N/A N/A N/A 1.001±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000533063 8.763±0.00 N/A N/A 0.869±0.00 6.181±0.00 6.102±0.00 N/A N/A 7.594±0.00 N/A N/A 11.116±0.00 N/A 3.530±0.00
ENST00000534018 N/A N/A N/A 0.286±0.00 N/A 1.865±0.00 N/A 3.722±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008C2 CIL_0008C2_0001 VISTA 8:143231340-143832399
CIL_0001NJ CIL_0001NJ_0001 CGP 8:143437655-143563062
CIL_0001NK CIL_0001NK_0001 CGP 8:143553207-143572971

Gene Ontology
GO IDEvidence TypeGO Description
GO:0031668 IEA cellular response to extracellular stimulus

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000022575 Gsdmd gasdermin D protein_coding Mus_musculus

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