C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001NJ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000014164-ENSG00000104518 CGP 9606 8:143437655-143563062
GeneTranscriptPositionBiotype
ENSG00000014164 (ZC3H3)
zinc finger CCCH-type containing 3 		ENST00000262577 (ZC3H3-001) 143437655-143541453 protein_coding
ENST00000528401 (ZC3H3-002) 143484497-143507840 protein_coding
ENSG00000104518 (GSDMD)
gasdermin D 		ENST00000262580 (GSDMD-001) 143558307-143563062 protein_coding
ENST00000524846 (GSDMD-004) 143558689-143563059 retained_intron
ENST00000525208 (GSDMD-010) 143562050-143563062 non_stop_decay
ENST00000525721 (GSDMD-017) 143558354-143559902 protein_coding
ENST00000526051 (GSDMD-013) 143560861-143561878 retained_intron
ENST00000526406 (GSDMD-002) 143553207-143563062 protein_coding
ENST00000526469 (GSDMD-008) 143560628-143563032 retained_intron
ENST00000528475 (GSDMD-007) 143560040-143563059 retained_intron
ENST00000529854 (GSDMD-009) 143553707-143559479 protein_coding
ENST00000531173 (GSDMD-012) 143561730-143563027 retained_intron
ENST00000531184 (GSDMD-005) 143558338-143563055 retained_intron
ENST00000533063 (GSDMD-003) 143557913-143563062 protein_coding
ENST00000533348 (GSDMD-014) 143557886-143560686 protein_coding
ENST00000533888 (GSDMD-016) 143558558-143560653 protein_coding
ENST00000534018 (GSDMD-015) 143558371-143561788 protein_coding
ENST00000534602 (GSDMD-011) 143561358-143562362 retained_intron
ENSG00000254859 (RP11-661A12.5)
 ENST00000530600 (RP11-661A12.5-001) 143541973-143549729 antisense
ENSG00000275558 (7SK)
7SK RNA 		ENST00000408472 (7SK.1-215) 143542110-143542398 misc_RNA

Homo sapiens Ensembl (GRCh38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_0001NJ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000075600-ENSMUSG00000022575 CGP 10090 15:75754432-75867404
GeneTranscriptPositionBiotype
ENSMUSG00000022575 (Gsdmd)
gasdermin D 		ENSMUST00000023238 (Gsdmd-201) 75862339-75867404 protein_coding
ENSMUSG00000075600 (Zc3h3)
zinc finger CCCH type containing 3 		ENSMUST00000100538 (Zc3h3-201) 75754432-75841915 protein_coding
ENSMUSG00000077416 (Gm23747)
predicted gene, 23747 		ENSMUST00000104228 (Gm23747-201) 75759859-75759989 snoRNA
ENSMUSG00000098203 (Gm9568)
predicted gene 9568 		ENSMUST00000182514 (Gm9568-001) 75854819-75856228 processed_pseudogene

Mus musculus Ensembl (GRCm38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001NJ_0001ENSG00000014164ENST00000262577ENST00000528401ENSG00000104518ENST00000262580ENST00000524846ENST00000525208ENST00000525721ENST00000526051ENST00000526406ENST00000526469ENST00000528475ENST00000529854ENST00000531173ENST00000531184ENST00000533063ENST00000533348ENST00000533888ENST00000534018ENST00000534602ENSG00000254859ENST00000530600ENSG00000275558ENST00000408472CIL_0001NJ_0002ENSMUSG00000022575ENSMUST00000023238ENSMUSG00000075600ENSMUST00000100538ENSMUSG00000077416ENSMUST00000104228ENSMUSG00000098203ENSMUST00000182514
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001NJ_0001ENSG00000014164ENST00000262577ENSG00000104518ENST00000262580ENST00000524846ENST00000525208ENST00000525721ENST00000526051ENST00000526469ENST00000528475ENST00000531184ENST00000533063ENST00000534018ENSG00000254859ENST00000530600ENSG00000275558ENST00000408472CIL_0001NJ_0002ENSMUSG00000022575ENSMUST00000023238ENSMUSG00000075600ENSMUST00000100538ENSMUSG00000077416ENSMUST00000104228ENSMUSG00000098203ENSMUST00000182514
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000014164 ENST00000262577 6.128±0.00 7.590±0.00 N/A 2.178±2.00 2.970±2.19 2.205±2.03 2.982±0.00 7.169±0.00 1.967±1.41 3.597±2.45 8.447±7.47 7.076±5.51 5.915±2.73 11.623±5.31
ENST00000528401 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000104518 ENST00000262580 28.814±0.00 69.304±0.00 N/A 0.466±0.00 11.985±0.00 10.033±0.00 1.651±1.31 22.622±0.00 9.714±9.11 25.486±0.00 4.761±0.00 21.286±10.82 41.996±11.05 5.318±2.98
ENST00000524846 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.175±0.00 N/A N/A
ENST00000525208 N/A 71.922±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000525721 N/A N/A N/A N/A N/A N/A 1.080±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000526051 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.150±0.00 N/A N/A N/A
ENST00000526406 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000526469 N/A N/A N/A N/A N/A N/A 1.962±0.00 12.969±0.00 N/A 18.953±0.00 N/A N/A N/A N/A
ENST00000528475 N/A N/A 0.509±0.00 0.164±0.00 0.843±0.00 N/A N/A N/A N/A N/A 0.323±0.00 8.434±0.67 N/A 2.365±0.00
ENST00000529854 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000531173 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000531184 N/A N/A N/A N/A N/A 1.001±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000533063 8.763±0.00 N/A N/A 0.869±0.00 6.181±0.00 6.102±0.00 N/A N/A 7.594±0.00 N/A N/A 11.116±0.00 N/A 3.530±0.00
ENST00000533348 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000533888 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000534018 N/A N/A N/A 0.286±0.00 N/A 1.865±0.00 N/A 3.722±0.00 N/A N/A N/A N/A N/A N/A
ENST00000534602 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000254859 ENST00000530600 N/A 0.426±0.00 N/A 0.054±0.00 0.602±0.06 N/A N/A 0.172±0.00 N/A 0.200±0.00 N/A 0.450±0.52 0.337±0.13 2.178±2.02
ENSG00000275558 ENST00000408472 N/A 1.368±0.00 1.537±0.00 0.327±0.17 1.394±0.03 N/A N/A N/A 1.802±0.00 N/A 1.241±0.71 0.482±0.13 1.210±0.00 0.341±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000022575 ENSMUST00000023238 9.590±2.62 2.330±1.11 23.179±3.08 0.980±0.55 8.652±2.45 48.729±4.77 3.290±0.23 3.167±0.39 8.609±3.28 15.242±1.26 0.921±0.47 5.918±2.93 2.974±1.77 3.404±1.35
ENSMUSG00000075600 ENSMUST00000100538 1.863±0.81 3.350±0.50 4.915±0.92 5.270±3.59 2.415±1.01 5.341±0.72 0.753±0.38 1.696±0.29 1.399±0.89 2.843±1.14 0.610±0.18 3.047±1.56 1.467±0.88 7.376±4.11
ENSMUSG00000077416 ENSMUST00000104228 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 15.184±0.00 16.321±0.00 N/A
ENSMUSG00000098203 ENSMUST00000182514 0.059±0.00 N/A 0.009±0.00 0.001±0.00 0.033±0.00 N/A N/A 0.062±0.00 0.006±0.00 N/A N/A N/A 0.005±0.00 0.030±0.00

Loading