C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001NJ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000014164-ENSG00000104518 CGP 9606 8:143437655-143563062
GeneTranscriptPositionBiotype
ENSG00000014164 (ZC3H3)
zinc finger CCCH-type containing 3 		ENST00000262577 (ZC3H3-001) 143437655-143541453 protein_coding
ENST00000528401 (ZC3H3-002) 143484497-143507840 protein_coding
ENSG00000104518 (GSDMD)
gasdermin D 		ENST00000262580 (GSDMD-001) 143558307-143563062 protein_coding
ENST00000524846 (GSDMD-004) 143558689-143563059 retained_intron
ENST00000525208 (GSDMD-010) 143562050-143563062 non_stop_decay
ENST00000525721 (GSDMD-017) 143558354-143559902 protein_coding
ENST00000526051 (GSDMD-013) 143560861-143561878 retained_intron
ENST00000526406 (GSDMD-002) 143553207-143563062 protein_coding
ENST00000526469 (GSDMD-008) 143560628-143563032 retained_intron
ENST00000528475 (GSDMD-007) 143560040-143563059 retained_intron
ENST00000529854 (GSDMD-009) 143553707-143559479 protein_coding
ENST00000531173 (GSDMD-012) 143561730-143563027 retained_intron
ENST00000531184 (GSDMD-005) 143558338-143563055 retained_intron
ENST00000533063 (GSDMD-003) 143557913-143563062 protein_coding
ENST00000533348 (GSDMD-014) 143557886-143560686 protein_coding
ENST00000533888 (GSDMD-016) 143558558-143560653 protein_coding
ENST00000534018 (GSDMD-015) 143558371-143561788 protein_coding
ENST00000534602 (GSDMD-011) 143561358-143562362 retained_intron
ENSG00000254859 (RP11-661A12.5)
 ENST00000530600 (RP11-661A12.5-001) 143541973-143549729 antisense
ENSG00000275558 (7SK)
7SK RNA 		ENST00000408472 (7SK.1-215) 143542110-143542398 misc_RNA
CIL_0001NJ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000075600-ENSMUSG00000022575 CGP 10090 15:75754432-75867404
GeneTranscriptPositionBiotype
ENSMUSG00000022575 (Gsdmd)
gasdermin D 		ENSMUST00000023238 (Gsdmd-201) 75862339-75867404 protein_coding
ENSMUSG00000075600 (Zc3h3)
zinc finger CCCH type containing 3 		ENSMUST00000100538 (Zc3h3-201) 75754432-75841915 protein_coding
ENSMUSG00000077416 (Gm23747)
predicted gene, 23747 		ENSMUST00000104228 (Gm23747-201) 75759859-75759989 snoRNA
ENSMUSG00000098203 (Gm9568)
predicted gene 9568 		ENSMUST00000182514 (Gm9568-001) 75854819-75856228 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001NJ_0001ENSG00000014164ENST00000262577ENST00000528401ENSG00000104518ENST00000262580ENST00000524846ENST00000525208ENST00000525721ENST00000526051ENST00000526406ENST00000526469ENST00000528475ENST00000529854ENST00000531173ENST00000531184ENST00000533063ENST00000533348ENST00000533888ENST00000534018ENST00000534602ENSG00000254859ENST00000530600ENSG00000275558ENST00000408472CIL_0001NJ_0002ENSMUSG00000022575ENSMUST00000023238ENSMUSG00000075600ENSMUST00000100538ENSMUSG00000077416ENSMUST00000104228ENSMUSG00000098203ENSMUST00000182514
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001NJ_0001ENSG00000014164ENST00000262577ENSG00000104518ENST00000262580ENST00000524846ENST00000525208ENST00000525721ENST00000526051ENST00000526469ENST00000528475ENST00000531184ENST00000533063ENST00000534018ENSG00000254859ENST00000530600ENSG00000275558ENST00000408472CIL_0001NJ_0002ENSMUSG00000022575ENSMUST00000023238ENSMUSG00000075600ENSMUST00000100538ENSMUSG00000077416ENSMUST00000104228ENSMUSG00000098203ENSMUST00000182514
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000014164 ENST00000262577 6.128±0.00 7.590±0.00 N/A 2.178±2.00 2.970±2.19 2.205±2.03 2.982±0.00 7.169±0.00 1.967±1.41 3.597±2.45 8.447±7.47 7.076±5.51 5.915±2.73 11.623±5.31
ENST00000528401 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000104518 ENST00000262580 28.814±0.00 69.304±0.00 N/A 0.466±0.00 11.985±0.00 10.033±0.00 1.651±1.31 22.622±0.00 9.714±9.11 25.486±0.00 4.761±0.00 21.286±10.82 41.996±11.05 5.318±2.98
ENST00000524846 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.175±0.00 N/A N/A
ENST00000525208 N/A 71.922±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000525721 N/A N/A N/A N/A N/A N/A 1.080±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000526051 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.150±0.00 N/A N/A N/A
ENST00000526406 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000526469 N/A N/A N/A N/A N/A N/A 1.962±0.00 12.969±0.00 N/A 18.953±0.00 N/A N/A N/A N/A
ENST00000528475 N/A N/A 0.509±0.00 0.164±0.00 0.843±0.00 N/A N/A N/A N/A N/A 0.323±0.00 8.434±0.67 N/A 2.365±0.00
ENST00000529854 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000531173 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000531184 N/A N/A N/A N/A N/A 1.001±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000533063 8.763±0.00 N/A N/A 0.869±0.00 6.181±0.00 6.102±0.00 N/A N/A 7.594±0.00 N/A N/A 11.116±0.00 N/A 3.530±0.00
ENST00000533348 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000533888 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000534018 N/A N/A N/A 0.286±0.00 N/A 1.865±0.00 N/A 3.722±0.00 N/A N/A N/A N/A N/A N/A
ENST00000534602 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000254859 ENST00000530600 N/A 0.426±0.00 N/A 0.054±0.00 0.602±0.06 N/A N/A 0.172±0.00 N/A 0.200±0.00 N/A 0.450±0.52 0.337±0.13 2.178±2.02
ENSG00000275558 ENST00000408472 N/A 1.368±0.00 1.537±0.00 0.327±0.17 1.394±0.03 N/A N/A N/A 1.802±0.00 N/A 1.241±0.71 0.482±0.13 1.210±0.00 0.341±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000022575 ENSMUST00000023238 9.590±2.62 2.330±1.11 23.179±3.08 0.980±0.55 8.652±2.45 48.729±4.77 3.290±0.23 3.167±0.39 8.609±3.28 15.242±1.26 0.921±0.47 5.918±2.93 2.974±1.77 3.404±1.35
ENSMUSG00000075600 ENSMUST00000100538 1.863±0.81 3.350±0.50 4.915±0.92 5.270±3.59 2.415±1.01 5.341±0.72 0.753±0.38 1.696±0.29 1.399±0.89 2.843±1.14 0.610±0.18 3.047±1.56 1.467±0.88 7.376±4.11
ENSMUSG00000077416 ENSMUST00000104228 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 15.184±0.00 16.321±0.00 N/A
ENSMUSG00000098203 ENSMUST00000182514 0.059±0.00 N/A 0.009±0.00 0.001±0.00 0.033±0.00 N/A N/A 0.062±0.00 0.006±0.00 N/A N/A N/A 0.005±0.00 0.030±0.00

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