C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: syntaxin 10
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000104915 STX10 9606 - 19:13144058-13150383 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000242770 STX10-004 13144062-13150178 protein_coding
  ENST00000343587 STX10-003 13144058-13150346 protein_coding
  ENST00000440593 STX10-010 13144489-13150341 nonsense_mediated_decay
  ENST00000587230 STX10-002 13144089-13150238 protein_coding
  ENST00000587318 STX10-008 13144062-13149885 protein_coding
  ENST00000588848 STX10-011 13144601-13150313 protein_coding
  ENST00000589083 STX10-005 13144062-13150226 protein_coding
  ENST00000591197 STX10-006 13145303-13150383 protein_coding
  ENST00000591415 STX10-009 13144615-13145414 protein_coding
  ENST00000591843 STX10-001 13144058-13150287 nonsense_mediated_decay
  ENST00000593126 STX10-007 13144271-13149839 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000242770ENST00000343587ENST00000587230ENST00000587318ENST00000589083ENST00000591197ENST00000591415ENST00000593126
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000242770 N/A 4.842±0.00 N/A N/A N/A N/A N/A 12.290±0.00 4.995±0.00 N/A N/A 5.174±0.20 2.751±0.43 4.091±0.00
ENST00000343587 3.799±0.00 7.276±0.00 N/A 3.019±0.00 6.926±5.80 9.515±0.00 3.806±0.00 7.139±0.00 4.522±0.00 6.705±0.00 N/A 10.926±4.70 2.688±0.23 4.550±0.98
ENST00000587230 14.117±0.00 13.121±0.00 0.950±0.00 3.600±0.51 17.771±0.00 8.642±7.06 4.678±4.56 4.065±0.00 2.357±1.77 7.931±5.46 10.820±0.00 25.156±13.72 8.997±2.37 14.498±0.00
ENST00000587318 N/A N/A N/A 3.444±0.00 N/A N/A N/A N/A 3.322±0.00 1.538±0.00 1.463±0.00 N/A N/A 3.505±0.00
ENST00000589083 N/A N/A N/A 1.506±0.00 1.337±0.00 N/A N/A 2.078±0.00 1.248±0.00 N/A N/A 9.478±0.00 2.561±0.79 N/A
ENST00000591197 3.939±0.00 N/A 0.852±0.00 6.243±0.00 N/A 4.168±3.51 N/A 0.817±0.00 N/A N/A N/A N/A N/A N/A
ENST00000591415 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.683±0.00 N/A 22.536±0.00 9.767±0.00 N/A
ENST00000593126 N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.968±0.00 N/A 7.707±0.00 2.999±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007VV CIL_0007VV_0001 VISTA 19:12752697-13356541
CIL_0007ZV CIL_0007ZV_0001 VISTA 19:12767682-13372012

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005484 IBA SNAP receptor activity
GO:0005515 IEA protein binding
GO:0005802 IDA trans-Golgi network
GO:0006886 IBA intracellular protein transport
GO:0006906 IBA vesicle fusion
GO:0016020 IEA membrane
GO:0016021 IBA integral component of membrane
GO:0016192 IEA vesicle-mediated transport
GO:0031201 IBA SNARE complex
GO:0042147 IDA retrograde transport, endosome to Golgi
GO:0048193 IEA Golgi vesicle transport
GO:0048471 IDA perinuclear region of cytoplasm

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000075030 CR847925.1 Uncharacterized protein protein_coding Danio_rerio

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