C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Src homology 2 domain containing transforming protein D
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000105251 SHD 9606 + 19:4278601-4290724 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000543264 SHD-001 4278601-4290724 protein_coding
  ENST00000593383 SHD-003 4283083-4290653 nonsense_mediated_decay
  ENST00000597466 SHD-005 4288192-4290564 retained_intron
  ENST00000599689 SHD-002 4279296-4290691 protein_coding
  ENST00000600475 SHD-004 4284431-4288314 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainColonHeartKidneyLiverLungOvaryTestisENST00000543264ENST00000593383ENST00000597466ENST00000599689ENST00000600475
Transcript ID Adrenal Brain Colon Heart Kidney Liver Lung Ovary Testis
ENST00000543264 N/A 0.178±0.00 N/A N/A N/A N/A N/A 0.122±0.00 0.083±0.00
ENST00000593383 N/A 3.490±0.00 1.364±0.81 N/A N/A 1.457±0.00 N/A N/A 0.208±0.00
ENST00000597466 N/A N/A 1.998±0.00 N/A 1.093±0.00 2.561±0.00 N/A 1.571±0.00 N/A
ENST00000599689 0.022±0.00 2.557±2.31 N/A 0.356±0.05 N/A 0.246±0.00 0.024±0.00 0.088±0.00 0.070±0.00
ENST00000600475 0.132±0.00 N/A N/A N/A N/A N/A N/A 1.484±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00034Q CIL_00034Q_0001 CGP 19:4247079-4290724

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000062109 shdb Src homology 2 domain containing transforming protein D, b protein_coding Danio_rerio
ENSDARG00000094243 shda Src homology 2 domain containing transforming protein D, a protein_coding Danio_rerio
ENSMUSG00000039154 Shd src homology 2 domain-containing transforming protein D protein_coding Mus_musculus

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