C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: fibronectin type III and SPRY domain containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000105255 FSD1 9606 + 19:4304600-4323843 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000221856 FSD1-001 4304600-4323836 protein_coding
  ENST00000594438 FSD1-011 4323035-4323665 protein_coding
  ENST00000597480 FSD1-008 4306001-4323766 protein_coding
  ENST00000597590 FSD1-005 4304676-4323806 protein_coding
  ENST00000598010 FSD1-010 4307939-4318950 processed_transcript
  ENST00000598179 FSD1-004 4311473-4323843 retained_intron
  ENST00000599375 FSD1-002 4304660-4311131 retained_intron
  ENST00000601006 FSD1-006 4304689-4323093 protein_coding
  ENST00000601678 FSD1-003 4304660-4311577 retained_intron
  ENST00000601815 FSD1-009 4304700-4310755 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000221856ENST00000594438ENST00000597480ENST00000597590ENST00000598010ENST00000598179ENST00000601006ENST00000601678ENST00000601815
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000221856 N/A N/A 7.281±6.32 N/A 0.078±0.00 N/A N/A N/A N/A N/A 0.279±0.05 0.675±0.05 10.082±0.00
ENST00000594438 N/A N/A N/A N/A 0.489±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000597480 N/A 0.430±0.00 N/A N/A N/A N/A N/A 0.077±0.00 N/A N/A N/A N/A N/A
ENST00000597590 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.545±0.00 0.727±0.00 4.210±0.00
ENST00000598010 N/A N/A N/A N/A N/A 0.046±0.00 N/A N/A N/A N/A N/A 0.431±0.00 2.282±0.00
ENST00000598179 0.078±0.00 0.365±0.00 N/A 0.200±0.00 0.453±0.00 0.074±0.00 0.020±0.00 0.069±0.00 0.136±0.00 0.103±0.00 0.229±0.11 N/A 1.470±0.00
ENST00000601006 N/A N/A 22.241±0.00 N/A N/A N/A N/A N/A 1.181±0.00 N/A N/A N/A N/A
ENST00000601678 0.100±0.00 0.350±0.00 N/A 0.038±0.00 0.181±0.00 0.015±0.00 0.148±0.00 0.036±0.00 N/A 0.027±0.00 0.050±0.00 N/A N/A
ENST00000601815 N/A N/A N/A N/A N/A N/A 0.959±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005QV CIL_0005QV_0002 CGP 19:4304600-4342786

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005874 IEA microtubule
GO:0007067 IEA mitotic nuclear division

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000062017 fsd1 fibronectin type III and SPRY domain containing 1 protein_coding Danio_rerio
ENSMUSG00000011589 Fsd1 fibronectin type 3 and SPRY domain-containing protein protein_coding Mus_musculus

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