C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transportin 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000105576 TNPO2 9606 - 19:12699194-12724011 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000356861 TNPO2-004 12699201-12722355 protein_coding
  ENST00000425528 TNPO2-201 12699194-12723996 protein_coding
  ENST00000450764 TNPO2-005 12699673-12721715 protein_coding
  ENST00000585886 TNPO2-007 12702828-12722525 non_stop_decay
  ENST00000586775 TNPO2-010 12714904-12722287 nonsense_mediated_decay
  ENST00000587068 TNPO2-014 12703676-12705490 retained_intron
  ENST00000587155 TNPO2-015 12701599-12703050 retained_intron
  ENST00000587654 TNPO2-020 12715441-12722537 nonsense_mediated_decay
  ENST00000588151 TNPO2-011 12711243-12715266 retained_intron
  ENST00000588216 TNPO2-001 12701327-12724011 protein_coding
  ENST00000588484 TNPO2-019 12715198-12719287 retained_intron
  ENST00000588491 TNPO2-012 12703758-12706674 nonsense_mediated_decay
  ENST00000589149 TNPO2-017 12701054-12702845 protein_coding
  ENST00000589337 TNPO2-016 12719098-12723932 protein_coding
  ENST00000589572 TNPO2-013 12703757-12706282 nonsense_mediated_decay
  ENST00000589956 TNPO2-018 12710743-12722540 processed_transcript
  ENST00000590781 TNPO2-009 12719267-12723613 protein_coding
  ENST00000592287 TNPO2-002 12701153-12722572 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000356861ENST00000425528ENST00000450764ENST00000585886ENST00000588151ENST00000588216ENST00000589956ENST00000592287
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000356861 7.966±0.00 N/A 8.044±0.00 6.145±0.00 2.086±0.00 1.191±0.00 2.075±0.00 N/A 0.537±0.00 N/A 8.100±3.67 N/A 13.265±8.10
ENST00000425528 N/A N/A N/A 1.876±0.71 N/A 1.315±0.00 N/A N/A N/A 1.802±0.00 3.184±1.58 2.081±0.85 N/A
ENST00000450764 7.119±0.00 4.914±0.00 21.850±0.00 4.942±0.00 1.925±1.39 2.954±0.00 3.059±0.00 0.788±0.00 4.619±0.00 N/A 10.780±7.17 N/A 6.654±0.45
ENST00000585886 N/A N/A 1.847±0.00 N/A N/A N/A 1.411±0.00 N/A N/A 1.404±0.00 N/A N/A N/A
ENST00000588151 N/A N/A 5.751±0.00 N/A N/A N/A N/A 5.992±0.00 4.939±0.00 N/A N/A N/A N/A
ENST00000588216 N/A N/A N/A N/A 0.602±0.00 0.182±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000589956 N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.051±0.00 N/A N/A N/A
ENST00000592287 N/A N/A 1.669±0.00 N/A N/A N/A N/A 1.065±0.00 0.659±0.00 N/A 1.031±0.00 N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005488 IEA binding
GO:0005515 IPI:IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006886 IEA intracellular protein transport
GO:0008139 TAS nuclear localization sequence binding
GO:0008536 IEA Ran GTPase binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000038239 tnpo2 transportin 2 (importin 3, karyopherin beta 2b) protein_coding Danio_rerio
ENSDARG00000042887 TNPO2 (2 of 2) transportin 2 protein_coding Danio_rerio
ENSMUSG00000031691 Tnpo2 transportin 2 (importin 3, karyopherin beta 2b) protein_coding Mus_musculus

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