C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cartilage oligomeric matrix protein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000105664 COMP 9606 - 19:18782773-18791314 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000222271 COMP-001 18782773-18791314 protein_coding
  ENST00000425807 COMP-005 18782774-18791305 protein_coding
  ENST00000542601 COMP-007 18782773-18791305 protein_coding
  ENST00000612179 COMP-008 18786118-18787035 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000222271ENST00000425807ENST00000612179
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000222271 25.978±0.00 1.446±0.00 N/A N/A 0.615±0.00 2.513±0.00 1.219±0.00 0.429±0.00 N/A 7.279±0.00 3.909±0.00 1.030±0.00 9.786±3.65 11.296±0.00
ENST00000425807 25.943±0.00 N/A 0.025±0.00 0.143±0.00 1.684±1.30 1.135±0.00 0.954±0.94 2.082±0.00 N/A 0.052±0.00 1.711±0.98 2.316±2.44 4.495±2.21 25.992±0.00
ENST00000612179 N/A N/A N/A 0.447±0.00 N/A N/A N/A N/A 0.204±0.00 0.214±0.00 N/A 0.468±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004NL CIL_0004NL_0002 CGP 19:18683677-18791314

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001501 TAS skeletal system development
GO:0002020 IPI protease binding
GO:0003417 IEA growth plate cartilage development
GO:0005201 IEA extracellular matrix structural constituent
GO:0005509 IEA:IDA calcium ion binding
GO:0005515 IPI:IEA protein binding
GO:0005518 IDA collagen binding
GO:0005576 TAS:IEA extracellular region
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005615 IDA extracellular space
GO:0006915 IEA apoptotic process
GO:0007155 IEA cell adhesion
GO:0008201 IDA heparin binding
GO:0009887 TAS organ morphogenesis
GO:0030198 IEA:TAS extracellular matrix organization
GO:0031012 IDA extracellular matrix
GO:0043066 IDA negative regulation of apoptotic process
GO:0043395 IDA heparan sulfate proteoglycan binding
GO:0060173 IDA limb development
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000053865 COMP cartilage oligomeric matrix protein protein_coding Danio_rerio
ENSMUSG00000031849 Comp cartilage oligomeric matrix protein protein_coding Mus_musculus

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