C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cartilage oligomeric matrix protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000425807 COMP-005 ENSG00000105664 9606 - 19:18782774-18791305 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLungMuscleOvaryPlacentaTestisENST00000425807
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000425807 25.943±0.00 0.025±0.00 0.143±0.00 1.684±1.30 1.135±0.00 0.954±0.94 2.082±0.00 0.052±0.00 1.711±0.98 2.316±2.44 4.495±2.21 25.992±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004NL CIL_0004NL_0002 CGP 19:18683677-18791314

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001501 TAS skeletal system development
GO:0002020 IPI protease binding
GO:0005201 IEA extracellular matrix structural constituent
GO:0005509 IDA:IEA calcium ion binding
GO:0005515 IPI:IEA protein binding
GO:0005518 IDA collagen binding
GO:0005576 TAS:IEA extracellular region
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005615 IDA extracellular space
GO:0006915 IEA apoptotic process
GO:0007155 IEA cell adhesion
GO:0008201 IDA heparin binding
GO:0009887 TAS organ morphogenesis
GO:0030198 TAS extracellular matrix organization
GO:0031012 IDA extracellular matrix
GO:0043066 IDA negative regulation of apoptotic process
GO:0043395 IDA heparan sulfate proteoglycan binding
GO:0060173 IDA limb development
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000003659 Comp-201 protein_coding Mus_musculus 0 1864
ENSDART00000057305 thbs3a-001 protein_coding Danio_rerio 0 477
ENSDART00000102572 thbs4b-001 protein_coding Danio_rerio 0 442

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