C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Cbl proto-oncogene-like 1, E3 ubiquitin protein ligase
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000105879 CBLL1 9606 + 7:107743697-107761667 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000222597 CBLL1-014 107744142-107759686 protein_coding
  ENST00000415884 CBLL1-009 107744155-107758571 protein_coding
  ENST00000420796 CBLL1-006 107744437-107758820 protein_coding
  ENST00000432748 CBLL1-011 107744142-107758180 nonsense_mediated_decay
  ENST00000440859 CBLL1-004 107743697-107761667 protein_coding
  ENST00000479443 CBLL1-010 107743949-107749316 retained_intron
  ENST00000487517 CBLL1-013 107744145-107755592 retained_intron
  ENST00000493361 CBLL1-012 107744145-107754183 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000222597ENST00000415884ENST00000432748ENST00000440859ENST00000487517
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000222597 2.253±0.00 2.351±0.00 2.223±0.00 3.113±1.28 N/A 1.874±0.00 2.550±0.07 1.407±0.00 3.016±0.00 1.278±0.00 2.405±0.00 3.193±0.02 1.491±0.39 9.112±3.59
ENST00000415884 N/A N/A N/A 5.963±0.00 5.658±0.00 N/A 3.022±0.00 N/A 4.436±0.00 5.406±0.00 3.750±0.00 N/A N/A N/A
ENST00000432748 N/A N/A N/A N/A N/A N/A N/A 2.154±0.00 N/A N/A N/A N/A N/A N/A
ENST00000440859 2.080±0.00 N/A N/A 2.582±0.78 2.770±0.12 2.914±0.63 2.571±1.03 3.238±0.00 3.208±0.00 3.153±0.91 4.031±2.31 5.084±1.11 2.455±0.65 3.845±1.16
ENST00000487517 N/A N/A N/A N/A N/A 6.736±0.00 N/A N/A N/A N/A N/A 7.974±0.00 8.105±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008ZV CIL_0008ZV_0001 VISTA 7:107646717-108248447

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000151 IC ubiquitin ligase complex
GO:0003676 IEA nucleic acid binding
GO:0004842 ISS ubiquitin-protein transferase activity
GO:0005515 IPI:IEA protein binding
GO:0007162 ISS negative regulation of cell adhesion
GO:0008270 IEA zinc ion binding
GO:0016337 IDA single organismal cell-cell adhesion
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity
GO:0030335 ISS positive regulation of cell migration
GO:0042802 IEA identical protein binding
GO:0045807 ISS positive regulation of endocytosis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000015222 cbll1 Cas-Br-M (murine) ecotropic retroviral transforming sequence-like 1 protein_coding Danio_rerio
ENSDARG00000045823 CU041386.1 Uncharacterized protein protein_coding Danio_rerio
ENSMUSG00000020659 Cbll1 Casitas B-lineage lymphoma-like 1 protein_coding Mus_musculus

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