C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: limb development membrane protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000105983 LMBR1 9606 - 7:156668946-156893230 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000353442 LMBR1-001 156677791-156893230 protein_coding
  ENST00000359422 LMBR1-201 156680877-156893208 protein_coding
  ENST00000414218 LMBR1-010 156796474-156893179 nonsense_mediated_decay
  ENST00000415428 LMBR1-004 156682211-156892987 protein_coding
  ENST00000430278 LMBR1-008 156763110-156893183 processed_transcript
  ENST00000430825 LMBR1-019 156668946-156682093 processed_transcript
  ENST00000433968 LMBR1-011 156826634-156893183 processed_transcript
  ENST00000434278 LMBR1-009 156763125-156893182 nonsense_mediated_decay
  ENST00000434453 LMBR1-002 156822241-156893216 nonsense_mediated_decay
  ENST00000434503 LMBR1-014 156688098-156893208 nonsense_mediated_decay
  ENST00000444719 LMBR1-013 156763143-156893157 nonsense_mediated_decay
  ENST00000448926 LMBR1-005 156681520-156796493 nonsense_mediated_decay
  ENST00000454132 LMBR1-003 156682991-156893159 nonsense_mediated_decay
  ENST00000461469 LMBR1-007 156763703-156892579 processed_transcript
  ENST00000461603 LMBR1-015 156688103-156747978 processed_transcript
  ENST00000477983 LMBR1-016 156733861-156763177 retained_intron
  ENST00000485985 LMBR1-012 156833478-156893183 retained_intron
  ENST00000486837 LMBR1-017 156688114-156726103 retained_intron
  ENST00000498034 LMBR1-006 156826599-156892590 processed_transcript
  ENST00000609081 LMBR1-020 156676251-156679109 processed_transcript
  ENST00000609774 LMBR1-018 156677843-156679133 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000353442ENST00000359422ENST00000415428ENST00000448926ENST00000454132
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000353442 N/A N/A 0.897±0.00 1.675±0.00 0.981±0.58 N/A 0.422±0.00 1.650±0.00 N/A 1.531±0.83 N/A 2.012±0.80 N/A N/A
ENST00000359422 1.361±0.00 1.135±0.00 2.068±0.00 2.883±0.00 2.438±1.53 2.060±0.67 0.836±0.21 1.976±0.00 N/A 1.806±0.00 0.828±0.15 2.333±0.56 1.146±0.00 6.786±0.00
ENST00000415428 2.043±0.00 1.528±0.00 1.943±0.00 N/A 1.307±0.00 2.475±0.00 1.108±0.18 N/A 3.675±0.00 5.311±0.00 N/A 5.120±0.00 2.585±0.00 N/A
ENST00000448926 3.797±0.00 2.083±0.00 N/A 3.480±0.27 1.585±0.00 3.028±0.00 1.794±0.00 3.552±0.78 1.587±0.00 1.965±0.00 1.119±0.17 3.939±2.19 2.836±0.70 9.420±0.00
ENST00000454132 2.829±0.00 1.765±0.00 2.039±0.00 5.134±1.29 2.685±1.11 2.609±0.00 1.592±0.35 5.915±0.00 3.272±0.00 3.471±0.00 1.030±0.00 6.474±3.55 4.229±2.14 22.965±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00026H CIL_00026H_0001 CGP 7:155799986-156677130
CIL_000455 CIL_000455_0001 CGP 7:156640281-156893230
CIL_00025V CIL_00025V_0001 CGP 7:156668946-156973182

Gene Ontology

GO IDEvidence TypeGO Description
GO:0016021 IEA integral component of membrane
GO:0042733 IEA embryonic digit morphogenesis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000024092 lmbr1 limb region 1 homolog (mouse) protein_coding Danio_rerio
ENSMUSG00000010721 Lmbr1 limb region 1 protein_coding Mus_musculus

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