C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: YKT6 v-SNARE homolog (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000106636 YKT6 9606 + 7:44200968-44214294 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000223369 YKT6-001 44201049-44214294 protein_coding
  ENST00000421621 YKT6-003 44210708-44214292 retained_intron
  ENST00000424864 YKT6-007 44208136-44212613 nonsense_mediated_decay
  ENST00000447123 YKT6-004 44201012-44212595 processed_transcript
  ENST00000463014 YKT6-005 44207333-44208580 retained_intron
  ENST00000478411 YKT6-006 44208134-44208707 processed_transcript
  ENST00000496112 YKT6-002 44200968-44212889 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000223369ENST00000421621ENST00000447123ENST00000496112
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000223369 23.259±0.00 31.265±0.00 1.641±0.00 16.153±12.08 16.263±13.36 11.060±6.89 6.929±6.26 15.250±14.07 5.738±3.30 8.547±5.67 6.087±4.97 24.255±12.44 28.031±4.77 25.954±3.71
ENST00000421621 N/A N/A 0.499±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000447123 N/A N/A N/A 1.727±0.00 5.298±0.00 1.918±0.00 3.316±2.26 1.042±0.00 1.555±0.00 N/A N/A N/A 12.901±0.00 14.435±0.00
ENST00000496112 N/A N/A 0.795±0.00 1.400±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000J5 CIL_0000J5_0001 CGP 7:44144271-44214294
CIL_0000J6 CIL_0000J6_0001 CGP 7:44200968-44334577

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005484 IDA SNAP receptor activity
GO:0005737 IDA cytoplasm
GO:0005739 IDA mitochondrion
GO:0005768 IDA endosome
GO:0005783 IDA endoplasmic reticulum
GO:0005794 IDA Golgi apparatus
GO:0005887 IDA integral component of plasma membrane
GO:0006810 IEA transport
GO:0006888 IDA ER to Golgi vesicle-mediated transport
GO:0006903 IDA vesicle targeting
GO:0006904 IDA vesicle docking involved in exocytosis
GO:0008152 IEA metabolic process
GO:0015031 IEA protein transport
GO:0016021 IEA integral component of membrane
GO:0016192 IEA vesicle-mediated transport
GO:0019706 IDA protein-cysteine S-palmitoyltransferase activity
GO:0031201 ISS SNARE complex
GO:0031410 IEA cytoplasmic vesicle
GO:0042147 IDA retrograde transport, endosome to Golgi
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000038308 ykt6 YKT6 v-SNARE homolog (S. cerevisiae) protein_coding Danio_rerio
ENSMUSG00000002741 Ykt6 YKT6 homolog (S. Cerevisiae) protein_coding Mus_musculus

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