C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: YKT6 v-SNARE homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000223369 YKT6-001 ENSG00000106636 9606 + 7:44201049-44214294 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000223369
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000223369 23.259±0.00 31.265±0.00 1.641±0.00 16.153±12.08 16.263±13.36 11.060±6.89 6.929±6.26 15.250±14.07 5.738±3.30 8.547±5.67 6.087±4.97 24.255±12.44 28.031±4.77 25.954±3.71

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000J5 CIL_0000J5_0001 CGP 7:44144271-44214294
CIL_0000J6 CIL_0000J6_0001 CGP 7:44200968-44334577

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005484 IDA SNAP receptor activity
GO:0005737 IDA cytoplasm
GO:0005739 IDA mitochondrion
GO:0005768 IDA endosome
GO:0005783 IDA endoplasmic reticulum
GO:0005794 IDA Golgi apparatus
GO:0005887 IDA integral component of plasma membrane
GO:0006810 IEA transport
GO:0006888 IDA ER to Golgi vesicle-mediated transport
GO:0006903 IDA vesicle targeting
GO:0006904 IDA vesicle docking involved in exocytosis
GO:0008152 IEA metabolic process
GO:0015031 IEA protein transport
GO:0016021 IEA integral component of membrane
GO:0016192 IEA vesicle-mediated transport
GO:0019706 IDA protein-cysteine S-palmitoyltransferase activity
GO:0031201 ISS SNARE complex
GO:0031410 IEA cytoplasmic vesicle
GO:0042147 IDA retrograde transport, endosome to Golgi
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000002818 Ykt6-001 protein_coding Mus_musculus 0 856
ENSMUST00000143834 Ykt6-002 processed_transcript Mus_musculus 0 438

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