C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: chromosome 10 open reading frame 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000107815 C10orf2 9606 + 10:100987367-100994401 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000311916 C10orf2-001 100988026-100994401 protein_coding
  ENST00000370228 C10orf2-002 100988026-100994401 protein_coding
  ENST00000459764 C10orf2-005 100987795-100989884 processed_transcript
  ENST00000473656 C10orf2-004 100987550-100993580 processed_transcript
  ENST00000476766 C10orf2-003 100987367-100993363 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000311916
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000311916 2.541±0.00 7.020±0.00 0.842±0.00 2.940±0.00 2.405±0.76 3.055±0.68 2.691±0.00 4.990±0.00 0.739±0.00 1.892±1.12 5.979±0.00 6.061±2.34 3.558±1.04 5.579±1.90

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008BC CIL_0008BC_0001 VISTA 10:100387324-100989228
CIL_0008BD CIL_0008BD_0001 VISTA 10:100486833-101088338
CIL_0007U1 CIL_0007U1_0001 VISTA 10:100491715-101092615
CIL_000940 CIL_000940_0001 VISTA 10:100919065-101519843
CIL_0001CA CIL_0001CA_0002 CGP 10:100969458-100987515
CIL_0005ND CIL_0005ND_0001 CGP 10:100987367-101007836

Gene Ontology
GO IDEvidence TypeGO Description
GO:0002020 IPI protease binding
GO:0003678 IEA DNA helicase activity
GO:0003697 IDA single-stranded DNA binding
GO:0005524 IEA ATP binding
GO:0005739 IEA mitochondrion
GO:0006260 IEA DNA replication
GO:0006264 NAS mitochondrial DNA replication
GO:0006268 IEA DNA unwinding involved in DNA replication
GO:0006390 IMP transcription from mitochondrial promoter
GO:0008219 IEA cell death
GO:0034214 IDA protein hexamerization
GO:0042645 IDA mitochondrial nucleoid
GO:0043139 IDA 5'-3' DNA helicase activity
GO:0051260 IDA protein homooligomerization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000079969 C12H10orf2 chromosome 10 open reading frame 2 protein_coding Danio_rerio
ENSMUSG00000025209 Peo1 progressive external ophthalmoplegia 1 (human) protein_coding Mus_musculus

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