C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chromosome 10 open reading frame 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000311916 C10orf2-001 ENSG00000107815 9606 + 10:100988026-100994401 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000311916
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000311916 2.541±0.00 7.020±0.00 0.842±0.00 2.940±0.00 2.405±0.76 3.055±0.68 2.691±0.00 4.990±0.00 0.739±0.00 1.892±1.12 5.979±0.00 6.061±2.34 3.558±1.04 5.579±1.90

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008BC CIL_0008BC_0001 VISTA 10:100387324-100989228
CIL_0008BD CIL_0008BD_0001 VISTA 10:100486833-101088338
CIL_0007U1 CIL_0007U1_0001 VISTA 10:100491715-101092615
CIL_000940 CIL_000940_0001 VISTA 10:100919065-101519843
CIL_0001CA CIL_0001CA_0002 CGP 10:100969458-100987515
CIL_0005ND CIL_0005ND_0001 CGP 10:100987367-101007836

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002020 IPI protease binding
GO:0003678 IEA DNA helicase activity
GO:0003697 IDA single-stranded DNA binding
GO:0005524 IEA ATP binding
GO:0005739 IEA mitochondrion
GO:0006260 IEA DNA replication
GO:0006264 NAS mitochondrial DNA replication
GO:0006268 IEA DNA unwinding involved in DNA replication
GO:0006390 IMP transcription from mitochondrial promoter
GO:0008219 IEA cell death
GO:0034214 IDA protein hexamerization
GO:0042645 IDA mitochondrial nucleoid
GO:0043139 IDA 5'-3' DNA helicase activity
GO:0051260 IDA protein homooligomerization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000026227 Peo1-201 protein_coding Mus_musculus 0 2145

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