Institute of Cardiovascular Regeneration Webtool Repository

C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info
Description:	retinoic acid induced 1
Gene Accession	Gene Name	Tax ID	Strand	Position	Gene Biotype
ENSG00000108557	RAI1	9606	+	17:17681473-17811453	protein_coding
	Transcript Accession		Transcript Name	Position	Transcript Biotype
	ENST00000353383		RAI1-001	17681473-17811453	protein_coding
	ENST00000395774		RAI1-002	17782132-17795776	protein_coding
	ENST00000471135		RAI1-006	17682495-17793143	protein_coding
	ENST00000489697		RAI1-004	17681729-17685050	processed_transcript
	ENST00000582514		RAI1-009	17809282-17810689	processed_transcript
	ENST00000583166		RAI1-008	17798384-17804114	protein_coding

Expression Patterns

Transcript ID	Adipose	Brain	Breast	Colon	Heart	Kidney	Liver	Lung	Muscle	Ovary	Placenta	Testis
ENST00000353383	3.144±0.00	3.590±2.70	4.700±0.00	2.114±0.00	1.301±1.05	3.311±0.00	1.353±0.00	4.156±2.73	1.741±0.00	0.727±0.00	2.352±0.64	4.721±0.12

Conserved Regions
Region ID	Sub-Region	Region Type	Position
CIL_0009A0	CIL_0009A0_0001	VISTA	17:17235872-17840873
CIL_0000NM	CIL_0000NM_0001	CGP	17:17505563-17811453
CIL_00003U	CIL_00003U_0002	CGP	17:17681473-17837002

Gene Ontology
GO ID	Evidence Type	GO Description
GO:0001501	IEA	skeletal system development
GO:0005515	IEA	protein binding
GO:0005634	IDA	nucleus
GO:0005737	IEA	cytoplasm
GO:0006357	IEA	regulation of transcription from RNA polymerase II promoter
GO:0008270	IEA	zinc ion binding
GO:0032922	IMP	circadian regulation of gene expression
GO:0035326	IDA	enhancer binding
GO:0040015	IEA	negative regulation of multicellular organism growth
GO:0045893	IDA	positive regulation of transcription, DNA-templated

Homologs
ENSEMBL Accession	Gene Name	Description	Biotype	Species
ENSDARG00000076679	RAI1	retinoic acid induced 1	protein_coding	Danio_rerio
ENSMUSG00000062115	Rai1	retinoic acid induced 1	protein_coding	Mus_musculus

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