C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: retinoic acid induced 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000062115 Rai1 10090 + 11:60105013-60199197 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000064190 Rai1-201 60105013-60199195 protein_coding
  ENSMUST00000090806 Rai1-001 60140084-60192025 protein_coding
  ENSMUST00000102688 Rai1-005 60175879-60199197 protein_coding
  ENSMUST00000132012 Rai1-003 60105177-60185431 protein_coding
  ENSMUST00000149770 Rai1-002 60105013-60199197 processed_transcript
  ENSMUST00000156902 Rai1-004 60140259-60141247 processed_transcript
  ENSMUST00000171108 Rai1-202 60140082-60199195 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000064190ENSMUST00000090806ENSMUST00000102688ENSMUST00000149770ENSMUST00000171108
Transcript ID Adipose Adrenal Brain Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000064190 N/A N/A N/A N/A N/A N/A N/A N/A 2.755±0.68 6.018±0.00 N/A 0.585±0.00
ENSMUST00000090806 N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.698±0.00 2.699±0.00 0.480±0.18
ENSMUST00000102688 10.057±0.00 13.269±1.01 15.988±8.01 6.479±0.35 2.941±1.01 3.151±0.11 3.178±0.00 8.895±1.40 2.193±0.28 11.724±2.91 7.549±0.00 0.661±0.00
ENSMUST00000149770 N/A N/A 22.776±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000171108 N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.498±0.00 8.282±2.60 0.734±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009A0 CIL_0009A0_0002 VISTA 11:59693037-60296757
CIL_0000NM CIL_0000NM_0002 CGP 11:59970614-60199197
CIL_00003U CIL_00003U_0003 CGP 11:60105013-60222581

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001501 IMP skeletal system development
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0006357 IDA regulation of transcription from RNA polymerase II promoter
GO:0008270 IEA zinc ion binding
GO:0032922 IMP circadian regulation of gene expression
GO:0035326 ISS enhancer binding
GO:0040015 IMP negative regulation of multicellular organism growth
GO:0045893 ISS positive regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000076679 RAI1 retinoic acid induced 1 protein_coding Danio_rerio
ENSG00000108557 RAI1 retinoic acid induced 1 protein_coding Homo_sapiens

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